miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23894 5' -60.2 NC_005262.1 + 46319 0.66 0.502194
Target:  5'- -gCGGCGcGCGCUuCGUCCUGgaaCUCGg- -3'
miRNA:   3'- agGCCGC-UGCGAcGCAGGAC---GAGCac -5'
23894 5' -60.2 NC_005262.1 + 29050 0.66 0.4923
Target:  5'- gCCGGCacGACGCgcaccGUGUUCgGCUCGa- -3'
miRNA:   3'- aGGCCG--CUGCGa----CGCAGGaCGAGCac -5'
23894 5' -60.2 NC_005262.1 + 30583 0.66 0.482497
Target:  5'- gUCGGCaauguGGCGCUcGuCGUCCUGCgUCGg- -3'
miRNA:   3'- aGGCCG-----CUGCGA-C-GCAGGACG-AGCac -5'
23894 5' -60.2 NC_005262.1 + 40458 0.66 0.482497
Target:  5'- gCCGGcCGugGUcgaGCG-CgUGCUCGUGc -3'
miRNA:   3'- aGGCC-GCugCGa--CGCaGgACGAGCAC- -5'
23894 5' -60.2 NC_005262.1 + 45629 0.66 0.482497
Target:  5'- aCCGGCGACaGCUucccggagacGCG-CgaGCUCGUc -3'
miRNA:   3'- aGGCCGCUG-CGA----------CGCaGgaCGAGCAc -5'
23894 5' -60.2 NC_005262.1 + 31013 0.67 0.46318
Target:  5'- gCCGGCG-CGCcgccgGUGUCgaGCUUGUc -3'
miRNA:   3'- aGGCCGCuGCGa----CGCAGgaCGAGCAc -5'
23894 5' -60.2 NC_005262.1 + 5025 0.67 0.46318
Target:  5'- gCCGGa-ACGCggaggGUG-CCUGCUCGUa -3'
miRNA:   3'- aGGCCgcUGCGa----CGCaGGACGAGCAc -5'
23894 5' -60.2 NC_005262.1 + 63660 0.67 0.46318
Target:  5'- cUCCGGCGACGCU---UUCUGCUa-UGg -3'
miRNA:   3'- -AGGCCGCUGCGAcgcAGGACGAgcAC- -5'
23894 5' -60.2 NC_005262.1 + 44673 0.67 0.453675
Target:  5'- gCCGGCGACGCgcccGCGcCCgauccGaaCGUGg -3'
miRNA:   3'- aGGCCGCUGCGa---CGCaGGa----CgaGCAC- -5'
23894 5' -60.2 NC_005262.1 + 15102 0.67 0.444277
Target:  5'- uUUCuGCGGCGCgGCGUCCgGCUgGa- -3'
miRNA:   3'- -AGGcCGCUGCGaCGCAGGaCGAgCac -5'
23894 5' -60.2 NC_005262.1 + 37886 0.67 0.434989
Target:  5'- -gUGGCGACGUaccaUGCG-CgCUGCUCGg- -3'
miRNA:   3'- agGCCGCUGCG----ACGCaG-GACGAGCac -5'
23894 5' -60.2 NC_005262.1 + 9361 0.67 0.425814
Target:  5'- uUCCGGuCGGCGCgcgcgGCGgCCUGCgccuccgCGa- -3'
miRNA:   3'- -AGGCC-GCUGCGa----CGCaGGACGa------GCac -5'
23894 5' -60.2 NC_005262.1 + 13479 0.68 0.407816
Target:  5'- -gCGGCgGGCGCUGCGgCCgGCUCc-- -3'
miRNA:   3'- agGCCG-CUGCGACGCaGGaCGAGcac -5'
23894 5' -60.2 NC_005262.1 + 11645 0.68 0.407816
Target:  5'- cUCGGCGGCGCcgGCGUCgcgCUGCaCGcUGg -3'
miRNA:   3'- aGGCCGCUGCGa-CGCAG---GACGaGC-AC- -5'
23894 5' -60.2 NC_005262.1 + 11914 0.68 0.398997
Target:  5'- gUUCGGCGGCGUcgGCucgGUCgUGCUCGc- -3'
miRNA:   3'- -AGGCCGCUGCGa-CG---CAGgACGAGCac -5'
23894 5' -60.2 NC_005262.1 + 24394 0.68 0.373285
Target:  5'- aCCGGCGGCGCgcaCGUCC-GCgaagGUGa -3'
miRNA:   3'- aGGCCGCUGCGac-GCAGGaCGag--CAC- -5'
23894 5' -60.2 NC_005262.1 + 17052 0.68 0.373285
Target:  5'- aCCGGCGugGCgGCGaucgaUCC-GgUCGUGc -3'
miRNA:   3'- aGGCCGCugCGaCGC-----AGGaCgAGCAC- -5'
23894 5' -60.2 NC_005262.1 + 4091 0.68 0.364968
Target:  5'- gCCGGCGACGUaGCGcCCg---CGUGg -3'
miRNA:   3'- aGGCCGCUGCGaCGCaGGacgaGCAC- -5'
23894 5' -60.2 NC_005262.1 + 42291 0.69 0.356781
Target:  5'- aCCGGCGACGUguucucgcGCGUCUacgucuacacGUUCGUGa -3'
miRNA:   3'- aGGCCGCUGCGa-------CGCAGGa---------CGAGCAC- -5'
23894 5' -60.2 NC_005262.1 + 14444 0.69 0.34633
Target:  5'- gCCGagucgucagcgagcGCGGCGC-GCG-CCUGCUCGUc -3'
miRNA:   3'- aGGC--------------CGCUGCGaCGCaGGACGAGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.