miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23895 3' -59.5 NC_005262.1 + 58597 0.67 0.459913
Target:  5'- aAUGGGCugAUGGGGCGccucgaugcGCuGCACCGUCAg -3'
miRNA:   3'- cUGUCCG--UACUCCGC---------UG-CGUGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 54006 0.67 0.457015
Target:  5'- ---uGGCGUucgacgacGAGGCGAUGCugccgaacccauuuGCCGCCGa -3'
miRNA:   3'- cuguCCGUA--------CUCCGCUGCG--------------UGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 58454 0.67 0.450293
Target:  5'- cGGCAGGCGUGc-GCGGCGuCACgaCGUCGg -3'
miRNA:   3'- -CUGUCCGUACucCGCUGC-GUG--GCGGU- -5'
23895 3' -59.5 NC_005262.1 + 32778 0.67 0.440784
Target:  5'- cGACAaGCucgacaccGGCGGCGCGCCgGCCAu -3'
miRNA:   3'- -CUGUcCGuacu----CCGCUGCGUGG-CGGU- -5'
23895 3' -59.5 NC_005262.1 + 11641 0.67 0.43139
Target:  5'- --gAGGCcgGGGuaGuuGCGCGCCGCCu -3'
miRNA:   3'- cugUCCGuaCUCcgC--UGCGUGGCGGu -5'
23895 3' -59.5 NC_005262.1 + 16583 0.67 0.429526
Target:  5'- aGCAGGCGcgugugcuggucGAGGCGGCGaagcaGCCGCg- -3'
miRNA:   3'- cUGUCCGUa-----------CUCCGCUGCg----UGGCGgu -5'
23895 3' -59.5 NC_005262.1 + 16065 0.67 0.422115
Target:  5'- cGGCGGcGCAccagauacAGGCGGCGaGCCGCCGc -3'
miRNA:   3'- -CUGUC-CGUac------UCCGCUGCgUGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 17128 0.67 0.422115
Target:  5'- cGGCGGGCGUcGGuGcCGGCGCcauGCUGCCGc -3'
miRNA:   3'- -CUGUCCGUAcUC-C-GCUGCG---UGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 12796 0.67 0.422115
Target:  5'- cGugA-GCAUuGGGCGGCGCGCaGCCGg -3'
miRNA:   3'- -CugUcCGUAcUCCGCUGCGUGgCGGU- -5'
23895 3' -59.5 NC_005262.1 + 48099 0.67 0.422115
Target:  5'- cGACGcGCgAUGAuGUGACGCGCCGCg- -3'
miRNA:   3'- -CUGUcCG-UACUcCGCUGCGUGGCGgu -5'
23895 3' -59.5 NC_005262.1 + 52141 0.68 0.412961
Target:  5'- cGGCcaGCGUGcAGcGCGACGCcggcGCCGCCGa -3'
miRNA:   3'- -CUGucCGUAC-UC-CGCUGCG----UGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 36818 0.68 0.412961
Target:  5'- cGGCGGGCGUGA-GCGAUGCcauuucuUCGUCGg -3'
miRNA:   3'- -CUGUCCGUACUcCGCUGCGu------GGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 206 0.68 0.412052
Target:  5'- cGCcGGCG-GGGGCGGCGgagccagacacgcUACCGCCGg -3'
miRNA:   3'- cUGuCCGUaCUCCGCUGC-------------GUGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 49710 0.68 0.40393
Target:  5'- cGAC-GGCGUGccGGGCGGCGaACCGgCGg -3'
miRNA:   3'- -CUGuCCGUAC--UCCGCUGCgUGGCgGU- -5'
23895 3' -59.5 NC_005262.1 + 31169 0.68 0.40393
Target:  5'- gGugAGaGCGUGAagaucGGCGACGCGacgaucacgcUCGCCGa -3'
miRNA:   3'- -CugUC-CGUACU-----CCGCUGCGU----------GGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 61166 0.68 0.395025
Target:  5'- cGGCGGGCGagcUGAcgGGCG-CGCGgCGCUAc -3'
miRNA:   3'- -CUGUCCGU---ACU--CCGCuGCGUgGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 25457 0.68 0.395025
Target:  5'- --gAGGCGcugcgcGAGGCGAUGCcGCuCGCCAa -3'
miRNA:   3'- cugUCCGUa-----CUCCGCUGCG-UG-GCGGU- -5'
23895 3' -59.5 NC_005262.1 + 37728 0.68 0.386248
Target:  5'- gGACAGGCAggGAcGGCuuGAUGCGCC-CCu -3'
miRNA:   3'- -CUGUCCGUa-CU-CCG--CUGCGUGGcGGu -5'
23895 3' -59.5 NC_005262.1 + 24152 0.68 0.386248
Target:  5'- gGAUGGGCGgcagGAGGCGcACGC-CUGCa- -3'
miRNA:   3'- -CUGUCCGUa---CUCCGC-UGCGuGGCGgu -5'
23895 3' -59.5 NC_005262.1 + 60141 0.68 0.3776
Target:  5'- cGGCgaAGGCAUG-GGCGAaGUacccgGCCGCCGu -3'
miRNA:   3'- -CUG--UCCGUACuCCGCUgCG-----UGGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.