miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23895 5' -56.1 NC_005262.1 + 28548 0.67 0.632394
Target:  5'- uCGCcgGgGGCgcccaGCCGCUGCCGa -3'
miRNA:   3'- -GUGuaCgCCGaauagUGGCGGCGGUc -5'
23895 5' -56.1 NC_005262.1 + 47442 0.67 0.632394
Target:  5'- aCGCG-GCGGCgccgAUCAgCGCgccgaGCCAGa -3'
miRNA:   3'- -GUGUaCGCCGaa--UAGUgGCGg----CGGUC- -5'
23895 5' -56.1 NC_005262.1 + 24341 0.67 0.632394
Target:  5'- gACAUGCGGCUcugcGUCGgCG-CGCCuGa -3'
miRNA:   3'- gUGUACGCCGAa---UAGUgGCgGCGGuC- -5'
23895 5' -56.1 NC_005262.1 + 49730 0.67 0.621469
Target:  5'- aACcgGCGGCcgaagccgCACCGaCGCCGGc -3'
miRNA:   3'- gUGuaCGCCGaaua----GUGGCgGCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 18398 0.67 0.621469
Target:  5'- ----cGCGGCUgccugcugCugCGCCGcCCAGa -3'
miRNA:   3'- guguaCGCCGAaua-----GugGCGGC-GGUC- -5'
23895 5' -56.1 NC_005262.1 + 10831 0.67 0.610553
Target:  5'- -cCAUGCccGGCUcgagCACCuuGCCGCCGGc -3'
miRNA:   3'- guGUACG--CCGAaua-GUGG--CGGCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 34146 0.67 0.610553
Target:  5'- gCGCggGCGGCaUGcCGCuCGCUGCCGa -3'
miRNA:   3'- -GUGuaCGCCGaAUaGUG-GCGGCGGUc -5'
23895 5' -56.1 NC_005262.1 + 42112 0.67 0.610553
Target:  5'- gUACA-GCaGCgcggCGCCGCCGCuCAGg -3'
miRNA:   3'- -GUGUaCGcCGaauaGUGGCGGCG-GUC- -5'
23895 5' -56.1 NC_005262.1 + 1091 0.67 0.604012
Target:  5'- uGCGUGCGcgauuacccaucgucGCgc-UCcccuGCCGCCGCCGGg -3'
miRNA:   3'- gUGUACGC---------------CGaauAG----UGGCGGCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 18790 0.67 0.599655
Target:  5'- cCGCGUGuUGGCguc-CGCCGCCuGCCGc -3'
miRNA:   3'- -GUGUAC-GCCGaauaGUGGCGG-CGGUc -5'
23895 5' -56.1 NC_005262.1 + 14069 0.67 0.599655
Target:  5'- --gGUGCGGCUU----CgGCCGCCGGu -3'
miRNA:   3'- gugUACGCCGAAuaguGgCGGCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 47712 0.68 0.593129
Target:  5'- cCGCGccggGCGGCggcUCGCCgccuguaucuggugcGCCGCCGGc -3'
miRNA:   3'- -GUGUa---CGCCGaauAGUGG---------------CGGCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 1044 0.68 0.588785
Target:  5'- cCACGUGCcgaauGCUgcggCGCUGaCCGCCAGc -3'
miRNA:   3'- -GUGUACGc----CGAaua-GUGGC-GGCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 53316 0.68 0.577951
Target:  5'- gGCGcUGCuGCUgGUCGCCGCUGUCGu -3'
miRNA:   3'- gUGU-ACGcCGAaUAGUGGCGGCGGUc -5'
23895 5' -56.1 NC_005262.1 + 42142 0.68 0.57147
Target:  5'- gCGCGUGUccuucaucaccaucuGGCc-GUCGCCGUCGCCGu -3'
miRNA:   3'- -GUGUACG---------------CCGaaUAGUGGCGGCGGUc -5'
23895 5' -56.1 NC_005262.1 + 30416 0.68 0.56716
Target:  5'- aGCuggGCGGCgucgacgAUCACgGCCGgCGGg -3'
miRNA:   3'- gUGua-CGCCGaa-----UAGUGgCGGCgGUC- -5'
23895 5' -56.1 NC_005262.1 + 16865 0.68 0.56716
Target:  5'- aCugAUGCaGGCgcccgGCCGCgCGCCGGg -3'
miRNA:   3'- -GugUACG-CCGaauagUGGCG-GCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 16349 0.68 0.556422
Target:  5'- gGCucgGCGcGCUgAUCGgCGCCGCCGc -3'
miRNA:   3'- gUGua-CGC-CGAaUAGUgGCGGCGGUc -5'
23895 5' -56.1 NC_005262.1 + 40424 0.68 0.556422
Target:  5'- uCACGuUGCGGgccuUCGCCGCCGCg-- -3'
miRNA:   3'- -GUGU-ACGCCgaauAGUGGCGGCGguc -5'
23895 5' -56.1 NC_005262.1 + 28403 0.68 0.554281
Target:  5'- aGCGUGCGcGCgguauugagCGCCGCgugCGCCAGc -3'
miRNA:   3'- gUGUACGC-CGaaua-----GUGGCG---GCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.