miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23896 3' -54.3 NC_005262.1 + 25227 0.66 0.815002
Target:  5'- aGCAUgcuucuuucauccgGCCcgcgGCgg-UGCCGAUCGUCa -3'
miRNA:   3'- -CGUGa-------------CGGua--CGacaACGGCUAGCGG- -5'
23896 3' -54.3 NC_005262.1 + 4738 0.66 0.811248
Target:  5'- gGCGgUGCuCGaGCUccUGCCGG-CGCCa -3'
miRNA:   3'- -CGUgACG-GUaCGAcaACGGCUaGCGG- -5'
23896 3' -54.3 NC_005262.1 + 58527 0.66 0.811248
Target:  5'- cGCcCUGcCCGUGCUGcUGCaCGAggCGUUc -3'
miRNA:   3'- -CGuGAC-GGUACGACaACG-GCUa-GCGG- -5'
23896 3' -54.3 NC_005262.1 + 61821 0.66 0.811248
Target:  5'- cCACUGCCAacacgGCa--UGCCGcAUCuGCCg -3'
miRNA:   3'- cGUGACGGUa----CGacaACGGC-UAG-CGG- -5'
23896 3' -54.3 NC_005262.1 + 36629 0.66 0.811248
Target:  5'- gGCACcacaCCAUGCg---GCCGGUgUGCCg -3'
miRNA:   3'- -CGUGac--GGUACGacaaCGGCUA-GCGG- -5'
23896 3' -54.3 NC_005262.1 + 18808 0.66 0.810305
Target:  5'- cGC-CUGCCGcgcggacUGCUGcacGUCGGcccUCGCCu -3'
miRNA:   3'- -CGuGACGGU-------ACGACaa-CGGCU---AGCGG- -5'
23896 3' -54.3 NC_005262.1 + 5197 0.66 0.80936
Target:  5'- gGCGCgGCCGgcgcgaccgaggGC-GUauccUGCaCGAUCGCCg -3'
miRNA:   3'- -CGUGaCGGUa-----------CGaCA----ACG-GCUAGCGG- -5'
23896 3' -54.3 NC_005262.1 + 53523 0.66 0.798845
Target:  5'- cGCGgUGCCAuucagucgccuccuUGaUGUcGCCGcUCGCCu -3'
miRNA:   3'- -CGUgACGGU--------------ACgACAaCGGCuAGCGG- -5'
23896 3' -54.3 NC_005262.1 + 34154 0.66 0.792042
Target:  5'- gGCA-UGCCGcucGCUGccgaUGCCGGUUGCg -3'
miRNA:   3'- -CGUgACGGUa--CGACa---ACGGCUAGCGg -5'
23896 3' -54.3 NC_005262.1 + 27664 0.66 0.792042
Target:  5'- cGCGCUgGCgGUGCUcgccucGCCGuAUCGCg -3'
miRNA:   3'- -CGUGA-CGgUACGAcaa---CGGC-UAGCGg -5'
23896 3' -54.3 NC_005262.1 + 20110 0.66 0.792042
Target:  5'- cGCGCgaauucgGCCcgGCUuggcUUGCguucaGGUCGCCa -3'
miRNA:   3'- -CGUGa------CGGuaCGAc---AACGg----CUAGCGG- -5'
23896 3' -54.3 NC_005262.1 + 49484 0.66 0.792042
Target:  5'- aGCGCgcauucuccgGCgGUGCgcgcaGCgCGAUCGCCg -3'
miRNA:   3'- -CGUGa---------CGgUACGacaa-CG-GCUAGCGG- -5'
23896 3' -54.3 NC_005262.1 + 11966 0.66 0.792042
Target:  5'- aGCACUucgcgacgucgGCCGcGCUGaaGUCG-UCGCCg -3'
miRNA:   3'- -CGUGA-----------CGGUaCGACaaCGGCuAGCGG- -5'
23896 3' -54.3 NC_005262.1 + 23459 0.66 0.792042
Target:  5'- aGCGCgccgGCCGUGa----GCCGAugcucgaagcggUCGCCg -3'
miRNA:   3'- -CGUGa---CGGUACgacaaCGGCU------------AGCGG- -5'
23896 3' -54.3 NC_005262.1 + 12568 0.66 0.792042
Target:  5'- gGCGCUcGUCGagcUGCUGcUGCCGccggcgaggcGUCGCg -3'
miRNA:   3'- -CGUGA-CGGU---ACGACaACGGC----------UAGCGg -5'
23896 3' -54.3 NC_005262.1 + 16761 0.66 0.782184
Target:  5'- gGCGCaGCCAUGCgauuuCgCGAUCGCg -3'
miRNA:   3'- -CGUGaCGGUACGacaacG-GCUAGCGg -5'
23896 3' -54.3 NC_005262.1 + 63169 0.66 0.782184
Target:  5'- aGCGCUGCUGggGCg--UGUgGGUgCGCCa -3'
miRNA:   3'- -CGUGACGGUa-CGacaACGgCUA-GCGG- -5'
23896 3' -54.3 NC_005262.1 + 32863 0.66 0.782184
Target:  5'- cGCACgugcggcGCCGaGCUGUUcGCCGcgucgaacGUCgGCCa -3'
miRNA:   3'- -CGUGa------CGGUaCGACAA-CGGC--------UAG-CGG- -5'
23896 3' -54.3 NC_005262.1 + 52753 0.66 0.782184
Target:  5'- aCGCUGCg--GcCUGUUGCUGcgCGCg -3'
miRNA:   3'- cGUGACGguaC-GACAACGGCuaGCGg -5'
23896 3' -54.3 NC_005262.1 + 21517 0.66 0.782184
Target:  5'- aCACgucGCCgGUGCccgUGCCGcucGUCGCCg -3'
miRNA:   3'- cGUGa--CGG-UACGacaACGGC---UAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.