miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23896 3' -54.3 NC_005262.1 + 49275 1.14 0.000674
Target:  5'- gGCACUGCCAUGCUGUUGCCGAUCGCCu -3'
miRNA:   3'- -CGUGACGGUACGACAACGGCUAGCGG- -5'
23896 3' -54.3 NC_005262.1 + 53292 0.84 0.082471
Target:  5'- cGCGCUgcugcuggccGCCAUGCUGgcgcugcUGCUGGUCGCCg -3'
miRNA:   3'- -CGUGA----------CGGUACGACa------ACGGCUAGCGG- -5'
23896 3' -54.3 NC_005262.1 + 804 0.76 0.254511
Target:  5'- aGCACUGUCAcGUUGUcGUCGAUCGUg -3'
miRNA:   3'- -CGUGACGGUaCGACAaCGGCUAGCGg -5'
23896 3' -54.3 NC_005262.1 + 37661 0.76 0.281852
Target:  5'- aGCACccagauugccgUGCCGUcGCUGUUGCCGAU-GUCc -3'
miRNA:   3'- -CGUG-----------ACGGUA-CGACAACGGCUAgCGG- -5'
23896 3' -54.3 NC_005262.1 + 40382 0.74 0.335198
Target:  5'- aCGCgGCuCAUGCUGcccGCCGcAUCGCCg -3'
miRNA:   3'- cGUGaCG-GUACGACaa-CGGC-UAGCGG- -5'
23896 3' -54.3 NC_005262.1 + 21361 0.74 0.335198
Target:  5'- uGCGCUGCUucgugAUGUUGcgGCCGGcuggCGCCg -3'
miRNA:   3'- -CGUGACGG-----UACGACaaCGGCUa---GCGG- -5'
23896 3' -54.3 NC_005262.1 + 9999 0.74 0.335198
Target:  5'- cCGCUGUCGaccUGCaucagGUUGCCGGuaUCGCCg -3'
miRNA:   3'- cGUGACGGU---ACGa----CAACGGCU--AGCGG- -5'
23896 3' -54.3 NC_005262.1 + 33757 0.74 0.343395
Target:  5'- gGCGCUGCguaacGCca-UGCCGAUCGCCg -3'
miRNA:   3'- -CGUGACGgua--CGacaACGGCUAGCGG- -5'
23896 3' -54.3 NC_005262.1 + 1843 0.74 0.368845
Target:  5'- -gGCUGCgCAUGCgGUUGCCugcuuGGUCGCg -3'
miRNA:   3'- cgUGACG-GUACGaCAACGG-----CUAGCGg -5'
23896 3' -54.3 NC_005262.1 + 37902 0.73 0.395557
Target:  5'- cGCGCUGCUcgGCaucgaucgUG-UGCCGugcuUCGCCu -3'
miRNA:   3'- -CGUGACGGuaCG--------ACaACGGCu---AGCGG- -5'
23896 3' -54.3 NC_005262.1 + 12114 0.73 0.395557
Target:  5'- aGCGCcGCCGUGCgcgcgaGCaGAUCGCCg -3'
miRNA:   3'- -CGUGaCGGUACGacaa--CGgCUAGCGG- -5'
23896 3' -54.3 NC_005262.1 + 40346 0.73 0.414045
Target:  5'- uCACgGCCGgcgcGCUGaUGUCGAUCGUCg -3'
miRNA:   3'- cGUGaCGGUa---CGACaACGGCUAGCGG- -5'
23896 3' -54.3 NC_005262.1 + 28808 0.72 0.456523
Target:  5'- cGCuGCUGCCcgGCUGccuggagcuucgacuUgcgGCCGAgCGCCg -3'
miRNA:   3'- -CG-UGACGGuaCGAC---------------Aa--CGGCUaGCGG- -5'
23896 3' -54.3 NC_005262.1 + 15294 0.72 0.462497
Target:  5'- cGCGCUGUUAccUGCgGcUGCCGucgCGCCg -3'
miRNA:   3'- -CGUGACGGU--ACGaCaACGGCua-GCGG- -5'
23896 3' -54.3 NC_005262.1 + 25459 0.71 0.482697
Target:  5'- gGCGCUGCgCGagGCga-UGCCGcUCGCCa -3'
miRNA:   3'- -CGUGACG-GUa-CGacaACGGCuAGCGG- -5'
23896 3' -54.3 NC_005262.1 + 63669 0.71 0.482697
Target:  5'- cGCuuuCUGCUAUGgaG--GUCGGUCGCCg -3'
miRNA:   3'- -CGu--GACGGUACgaCaaCGGCUAGCGG- -5'
23896 3' -54.3 NC_005262.1 + 44174 0.71 0.492956
Target:  5'- --uUUGCCggGCUGgacGCCGAcCGCCa -3'
miRNA:   3'- cguGACGGuaCGACaa-CGGCUaGCGG- -5'
23896 3' -54.3 NC_005262.1 + 42152 0.71 0.503314
Target:  5'- gGCGCcggGCCcgGUcGcgGCCGAUCGUCu -3'
miRNA:   3'- -CGUGa--CGGuaCGaCaaCGGCUAGCGG- -5'
23896 3' -54.3 NC_005262.1 + 34422 0.71 0.503314
Target:  5'- uGUACUGC--UGCUGUUGCUGcugaGCCu -3'
miRNA:   3'- -CGUGACGguACGACAACGGCuag-CGG- -5'
23896 3' -54.3 NC_005262.1 + 53223 0.71 0.510621
Target:  5'- cGCGCUGCUccgcgguacgcugcgGCUGcgcgcgGCCGGUCGCg -3'
miRNA:   3'- -CGUGACGGua-------------CGACaa----CGGCUAGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.