miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23896 3' -54.3 NC_005262.1 + 11571 0.68 0.698656
Target:  5'- cGCGCUGCUAUGCcGgcggcgGCCag-CGCUc -3'
miRNA:   3'- -CGUGACGGUACGaCaa----CGGcuaGCGG- -5'
23896 3' -54.3 NC_005262.1 + 30125 0.69 0.589004
Target:  5'- cCACgaucgUGCCGcUGCUGgucGCCGAagCGCCg -3'
miRNA:   3'- cGUG-----ACGGU-ACGACaa-CGGCUa-GCGG- -5'
23896 3' -54.3 NC_005262.1 + 15856 0.69 0.599961
Target:  5'- gGCACUcgacgGCCAUGUaccucgacgcgaUGgcGCUGAUcCGCCg -3'
miRNA:   3'- -CGUGA-----CGGUACG------------ACaaCGGCUA-GCGG- -5'
23896 3' -54.3 NC_005262.1 + 27176 0.69 0.63186
Target:  5'- cGCAUgguguggUGCCGUGCUGUgugGCaCuAUCgGCCg -3'
miRNA:   3'- -CGUG-------ACGGUACGACAa--CG-GcUAG-CGG- -5'
23896 3' -54.3 NC_005262.1 + 29162 0.69 0.632961
Target:  5'- gGCGCgcgaCCAUGCgucagGcgGCCG-UCGCCg -3'
miRNA:   3'- -CGUGac--GGUACGa----CaaCGGCuAGCGG- -5'
23896 3' -54.3 NC_005262.1 + 41959 0.69 0.632961
Target:  5'- cGCGCcuugUGCCGcGcCUGUUGCCuGAcacCGCCg -3'
miRNA:   3'- -CGUG----ACGGUaC-GACAACGG-CUa--GCGG- -5'
23896 3' -54.3 NC_005262.1 + 14537 0.69 0.642871
Target:  5'- gGCAgUGCCGUGCaUGc-GCUGGaucggcaggcgucUCGCCg -3'
miRNA:   3'- -CGUgACGGUACG-ACaaCGGCU-------------AGCGG- -5'
23896 3' -54.3 NC_005262.1 + 12870 0.68 0.676899
Target:  5'- cGCGCUGCCGUGCacgGUgacGCUcGUgCGCa -3'
miRNA:   3'- -CGUGACGGUACGa--CAa--CGGcUA-GCGg -5'
23896 3' -54.3 NC_005262.1 + 3680 0.68 0.687805
Target:  5'- uCGCUgGCCGUGaCgacgGUgaUGCCGG-CGCCg -3'
miRNA:   3'- cGUGA-CGGUAC-Ga---CA--ACGGCUaGCGG- -5'
23896 3' -54.3 NC_005262.1 + 10971 0.7 0.578083
Target:  5'- cGCGCUGUCGgcGCgccgGgaacGCCGGUCGCg -3'
miRNA:   3'- -CGUGACGGUa-CGa---Caa--CGGCUAGCGg -5'
23896 3' -54.3 NC_005262.1 + 31042 0.7 0.539194
Target:  5'- aGUACcGCC-UGCUGgUGCUGAccgacgccgacgcgcUCGCCg -3'
miRNA:   3'- -CGUGaCGGuACGACaACGGCU---------------AGCGG- -5'
23896 3' -54.3 NC_005262.1 + 25490 0.71 0.524305
Target:  5'- uGCACgaagGCCGaGCUGUUGU---UCGCCc -3'
miRNA:   3'- -CGUGa---CGGUaCGACAACGgcuAGCGG- -5'
23896 3' -54.3 NC_005262.1 + 33757 0.74 0.343395
Target:  5'- gGCGCUGCguaacGCca-UGCCGAUCGCCg -3'
miRNA:   3'- -CGUGACGgua--CGacaACGGCUAGCGG- -5'
23896 3' -54.3 NC_005262.1 + 1843 0.74 0.368845
Target:  5'- -gGCUGCgCAUGCgGUUGCCugcuuGGUCGCg -3'
miRNA:   3'- cgUGACG-GUACGaCAACGG-----CUAGCGg -5'
23896 3' -54.3 NC_005262.1 + 12114 0.73 0.395557
Target:  5'- aGCGCcGCCGUGCgcgcgaGCaGAUCGCCg -3'
miRNA:   3'- -CGUGaCGGUACGacaa--CGgCUAGCGG- -5'
23896 3' -54.3 NC_005262.1 + 40346 0.73 0.414045
Target:  5'- uCACgGCCGgcgcGCUGaUGUCGAUCGUCg -3'
miRNA:   3'- cGUGaCGGUa---CGACaACGGCUAGCGG- -5'
23896 3' -54.3 NC_005262.1 + 25459 0.71 0.482697
Target:  5'- gGCGCUGCgCGagGCga-UGCCGcUCGCCa -3'
miRNA:   3'- -CGUGACG-GUa-CGacaACGGCuAGCGG- -5'
23896 3' -54.3 NC_005262.1 + 42152 0.71 0.503314
Target:  5'- gGCGCcggGCCcgGUcGcgGCCGAUCGUCu -3'
miRNA:   3'- -CGUGa--CGGuaCGaCaaCGGCUAGCGG- -5'
23896 3' -54.3 NC_005262.1 + 28441 0.71 0.513766
Target:  5'- cCGC-GCCGUGCUc--GCCGuGUCGCCg -3'
miRNA:   3'- cGUGaCGGUACGAcaaCGGC-UAGCGG- -5'
23896 3' -54.3 NC_005262.1 + 46029 0.71 0.513766
Target:  5'- cGCGCUGCCGcGCUacuacgaaGUcaUGCgCGcGUCGCCg -3'
miRNA:   3'- -CGUGACGGUaCGA--------CA--ACG-GC-UAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.