miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23896 5' -61.1 NC_005262.1 + 16991 0.66 0.466787
Target:  5'- gCGGGCCugcacGUCGGUcaucGGCUCGCCGc -3'
miRNA:   3'- -GCCUGG-----CAGUCGucguCCGAGCGGCa -5'
23896 5' -61.1 NC_005262.1 + 44949 0.66 0.466787
Target:  5'- -cGAgCGUCAGgAGCAgauGGC-CGCCGa -3'
miRNA:   3'- gcCUgGCAGUCgUCGU---CCGaGCGGCa -5'
23896 5' -61.1 NC_005262.1 + 44980 0.66 0.457256
Target:  5'- aGGGCCGacgugCAGCaguccgcgcGGCAGGCggcggaCGCCa- -3'
miRNA:   3'- gCCUGGCa----GUCG---------UCGUCCGa-----GCGGca -5'
23896 5' -61.1 NC_005262.1 + 15725 0.66 0.457256
Target:  5'- cCGGGCggcuCGUC-GCGGCAGGUgCGaCCGa -3'
miRNA:   3'- -GCCUG----GCAGuCGUCGUCCGaGC-GGCa -5'
23896 5' -61.1 NC_005262.1 + 9773 0.66 0.457256
Target:  5'- uGGuGCUGUaGGCgAGCAGGUugccgugcuUCGCCGUg -3'
miRNA:   3'- gCC-UGGCAgUCG-UCGUCCG---------AGCGGCA- -5'
23896 5' -61.1 NC_005262.1 + 41373 0.66 0.457256
Target:  5'- gGGGuuGcCGGCgAGCAGGCggCGCuCGa -3'
miRNA:   3'- gCCUggCaGUCG-UCGUCCGa-GCG-GCa -5'
23896 5' -61.1 NC_005262.1 + 45874 0.66 0.456308
Target:  5'- --cGCCGUUGGCgucggcgccgaucGGC-GGCUCGCCGa -3'
miRNA:   3'- gccUGGCAGUCG-------------UCGuCCGAGCGGCa -5'
23896 5' -61.1 NC_005262.1 + 42211 0.66 0.438512
Target:  5'- -uGAUCGUCGGCGGCAcgacguacccGCUCGCgGUu -3'
miRNA:   3'- gcCUGGCAGUCGUCGUc---------CGAGCGgCA- -5'
23896 5' -61.1 NC_005262.1 + 63607 0.66 0.438512
Target:  5'- gCGGAUCGUCAcCGGCAcGCU-GCUGUa -3'
miRNA:   3'- -GCCUGGCAGUcGUCGUcCGAgCGGCA- -5'
23896 5' -61.1 NC_005262.1 + 13647 0.66 0.429306
Target:  5'- -aGGCgGUCGcGCAGCucAGGCUCGCUc- -3'
miRNA:   3'- gcCUGgCAGU-CGUCG--UCCGAGCGGca -5'
23896 5' -61.1 NC_005262.1 + 44172 0.66 0.429306
Target:  5'- aGGAgCG-CGGCGGCGaGCUCaauGCCGUu -3'
miRNA:   3'- gCCUgGCaGUCGUCGUcCGAG---CGGCA- -5'
23896 5' -61.1 NC_005262.1 + 19120 0.66 0.420215
Target:  5'- uCGGAUCG--GGC-GCGGGCgcgUCGCCGg -3'
miRNA:   3'- -GCCUGGCagUCGuCGUCCG---AGCGGCa -5'
23896 5' -61.1 NC_005262.1 + 22798 0.67 0.402389
Target:  5'- gCGGuGCCaUCAGCAGCgAGcGC-CGCCGc -3'
miRNA:   3'- -GCC-UGGcAGUCGUCG-UC-CGaGCGGCa -5'
23896 5' -61.1 NC_005262.1 + 26497 0.67 0.402389
Target:  5'- uGGAgCGUgCAGCAGCAGcGCUggaUGaCCGa -3'
miRNA:   3'- gCCUgGCA-GUCGUCGUC-CGA---GC-GGCa -5'
23896 5' -61.1 NC_005262.1 + 30031 0.67 0.402389
Target:  5'- uCGGACgaCGacgCAGCAGCGGGCaaGaCCGa -3'
miRNA:   3'- -GCCUG--GCa--GUCGUCGUCCGagC-GGCa -5'
23896 5' -61.1 NC_005262.1 + 33908 0.67 0.402389
Target:  5'- gCGGcCCGaUCGGUAGC-GGCggUGCCGa -3'
miRNA:   3'- -GCCuGGC-AGUCGUCGuCCGa-GCGGCa -5'
23896 5' -61.1 NC_005262.1 + 4828 0.67 0.397135
Target:  5'- uGaGGCCGcCGGCGGCcGGCUgguucgacugcugcgCGCCGa -3'
miRNA:   3'- gC-CUGGCaGUCGUCGuCCGA---------------GCGGCa -5'
23896 5' -61.1 NC_005262.1 + 60399 0.67 0.393657
Target:  5'- -aGAUCGUCGGCGGCAuGGCgcaCGUgGUc -3'
miRNA:   3'- gcCUGGCAGUCGUCGU-CCGa--GCGgCA- -5'
23896 5' -61.1 NC_005262.1 + 42164 0.67 0.391062
Target:  5'- uGGccgucGCCGUCgccgucgcacuccgGGCAGUcaGGGUUCGCCGc -3'
miRNA:   3'- gCC-----UGGCAG--------------UCGUCG--UCCGAGCGGCa -5'
23896 5' -61.1 NC_005262.1 + 31371 0.67 0.384195
Target:  5'- cCGGcgaugaaACCGgCAGCgauGGCGGGCUCGuucCCGUa -3'
miRNA:   3'- -GCC-------UGGCaGUCG---UCGUCCGAGC---GGCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.