miRNA display CGI


Results 21 - 40 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23896 5' -61.1 NC_005262.1 + 50534 0.67 0.376566
Target:  5'- uCGGACUGgu-GCugaugAGCAGGCUCGCg-- -3'
miRNA:   3'- -GCCUGGCaguCG-----UCGUCCGAGCGgca -5'
23896 5' -61.1 NC_005262.1 + 32705 0.67 0.368211
Target:  5'- aGGAUUGUCgGGCcGC-GGCUCGCCc- -3'
miRNA:   3'- gCCUGGCAG-UCGuCGuCCGAGCGGca -5'
23896 5' -61.1 NC_005262.1 + 47712 0.68 0.359984
Target:  5'- cCGcGCCG--GGCGGC-GGCUCGCCGc -3'
miRNA:   3'- -GCcUGGCagUCGUCGuCCGAGCGGCa -5'
23896 5' -61.1 NC_005262.1 + 34994 0.68 0.359984
Target:  5'- aGGcaGCCGggCAGCAGCgcGGGCcCGuCCGUa -3'
miRNA:   3'- gCC--UGGCa-GUCGUCG--UCCGaGC-GGCA- -5'
23896 5' -61.1 NC_005262.1 + 57209 0.68 0.351886
Target:  5'- cCGGACCugccgGUCGGCGGCAucGCgacgcgCGCCGc -3'
miRNA:   3'- -GCCUGG-----CAGUCGUCGUc-CGa-----GCGGCa -5'
23896 5' -61.1 NC_005262.1 + 11070 0.68 0.351886
Target:  5'- cCGuGAacuUCGUCAGCAGCGcGGCcUCGuCCGg -3'
miRNA:   3'- -GC-CU---GGCAGUCGUCGU-CCG-AGC-GGCa -5'
23896 5' -61.1 NC_005262.1 + 43836 0.68 0.351886
Target:  5'- gCGGGCCGgccgCGcGCGGC-GGUgCGCCGg -3'
miRNA:   3'- -GCCUGGCa---GU-CGUCGuCCGaGCGGCa -5'
23896 5' -61.1 NC_005262.1 + 14067 0.69 0.306043
Target:  5'- uCGGugCGgcuUCGGCcGCcGGUUCGCCGc -3'
miRNA:   3'- -GCCugGC---AGUCGuCGuCCGAGCGGCa -5'
23896 5' -61.1 NC_005262.1 + 1738 0.69 0.306043
Target:  5'- --cGCCGUguGCAGgAGGCgaugCGCCGc -3'
miRNA:   3'- gccUGGCAguCGUCgUCCGa---GCGGCa -5'
23896 5' -61.1 NC_005262.1 + 59461 0.69 0.298863
Target:  5'- aCGG-CCGauggaCGGCccGCgAGGCUCGCCGUa -3'
miRNA:   3'- -GCCuGGCa----GUCGu-CG-UCCGAGCGGCA- -5'
23896 5' -61.1 NC_005262.1 + 24032 0.69 0.291814
Target:  5'- gGGAUgGUCGGCuGGC-GGCUUGUCGa -3'
miRNA:   3'- gCCUGgCAGUCG-UCGuCCGAGCGGCa -5'
23896 5' -61.1 NC_005262.1 + 6276 0.69 0.284895
Target:  5'- -uGAUgGUCAGCAGCucGGCcuUCGCCGc -3'
miRNA:   3'- gcCUGgCAGUCGUCGu-CCG--AGCGGCa -5'
23896 5' -61.1 NC_005262.1 + 54839 0.69 0.284895
Target:  5'- uGGACCGaCAcGCAGCGcgccgaccGGCUCGUCa- -3'
miRNA:   3'- gCCUGGCaGU-CGUCGU--------CCGAGCGGca -5'
23896 5' -61.1 NC_005262.1 + 10404 0.69 0.282845
Target:  5'- cCGGcguuguccuugaacGCgGUCuGCGGCAGGCgcauggCGCCGa -3'
miRNA:   3'- -GCC--------------UGgCAGuCGUCGUCCGa-----GCGGCa -5'
23896 5' -61.1 NC_005262.1 + 38046 0.7 0.25224
Target:  5'- gCGGGCCGUgAGCGGCuugccGGCcugcgcgaUCGCCu- -3'
miRNA:   3'- -GCCUGGCAgUCGUCGu----CCG--------AGCGGca -5'
23896 5' -61.1 NC_005262.1 + 13215 0.71 0.22273
Target:  5'- cCGGGuuGagCGGCAGCGGGCUCggGCUGc -3'
miRNA:   3'- -GCCUggCa-GUCGUCGUCCGAG--CGGCa -5'
23896 5' -61.1 NC_005262.1 + 5017 0.71 0.20647
Target:  5'- uCGGcuGCCucCAGCGGCAGuuGCUCGCCGg -3'
miRNA:   3'- -GCC--UGGcaGUCGUCGUC--CGAGCGGCa -5'
23896 5' -61.1 NC_005262.1 + 11906 0.72 0.201283
Target:  5'- uCGGuGCCGuUCGGCGGCGucGGCUCgGUCGUg -3'
miRNA:   3'- -GCC-UGGC-AGUCGUCGU--CCGAG-CGGCA- -5'
23896 5' -61.1 NC_005262.1 + 32332 0.72 0.181653
Target:  5'- uGGGCCGUCA--GGCAGGCgugaUCGCCu- -3'
miRNA:   3'- gCCUGGCAGUcgUCGUCCG----AGCGGca -5'
23896 5' -61.1 NC_005262.1 + 45396 0.73 0.15136
Target:  5'- uGGGCgGcgCAGCAGCAGGCa-GCCGc -3'
miRNA:   3'- gCCUGgCa-GUCGUCGUCCGagCGGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.