miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23896 5' -61.1 NC_005262.1 + 17618 0.76 0.101384
Target:  5'- uGGAgCGcCAGCAGCGcGaGCUCGCCGa -3'
miRNA:   3'- gCCUgGCaGUCGUCGU-C-CGAGCGGCa -5'
23896 5' -61.1 NC_005262.1 + 60399 0.67 0.393657
Target:  5'- -aGAUCGUCGGCGGCAuGGCgcaCGUgGUc -3'
miRNA:   3'- gcCUGGCAGUCGUCGU-CCGa--GCGgCA- -5'
23896 5' -61.1 NC_005262.1 + 26497 0.67 0.402389
Target:  5'- uGGAgCGUgCAGCAGCAGcGCUggaUGaCCGa -3'
miRNA:   3'- gCCUgGCA-GUCGUCGUC-CGA---GC-GGCa -5'
23896 5' -61.1 NC_005262.1 + 30031 0.67 0.402389
Target:  5'- uCGGACgaCGacgCAGCAGCGGGCaaGaCCGa -3'
miRNA:   3'- -GCCUG--GCa--GUCGUCGUCCGagC-GGCa -5'
23896 5' -61.1 NC_005262.1 + 33908 0.67 0.402389
Target:  5'- gCGGcCCGaUCGGUAGC-GGCggUGCCGa -3'
miRNA:   3'- -GCCuGGC-AGUCGUCGuCCGa-GCGGCa -5'
23896 5' -61.1 NC_005262.1 + 44172 0.66 0.429306
Target:  5'- aGGAgCG-CGGCGGCGaGCUCaauGCCGUu -3'
miRNA:   3'- gCCUgGCaGUCGUCGUcCGAG---CGGCA- -5'
23896 5' -61.1 NC_005262.1 + 42211 0.66 0.438512
Target:  5'- -uGAUCGUCGGCGGCAcgacguacccGCUCGCgGUu -3'
miRNA:   3'- gcCUGGCAGUCGUCGUc---------CGAGCGgCA- -5'
23896 5' -61.1 NC_005262.1 + 44980 0.66 0.457256
Target:  5'- aGGGCCGacgugCAGCaguccgcgcGGCAGGCggcggaCGCCa- -3'
miRNA:   3'- gCCUGGCa----GUCG---------UCGUCCGa-----GCGGca -5'
23896 5' -61.1 NC_005262.1 + 44949 0.66 0.466787
Target:  5'- -cGAgCGUCAGgAGCAgauGGC-CGCCGa -3'
miRNA:   3'- gcCUgGCAGUCgUCGU---CCGaGCGGCa -5'
23896 5' -61.1 NC_005262.1 + 50534 0.67 0.376566
Target:  5'- uCGGACUGgu-GCugaugAGCAGGCUCGCg-- -3'
miRNA:   3'- -GCCUGGCaguCG-----UCGUCCGAGCGgca -5'
23896 5' -61.1 NC_005262.1 + 47712 0.68 0.359984
Target:  5'- cCGcGCCG--GGCGGC-GGCUCGCCGc -3'
miRNA:   3'- -GCcUGGCagUCGUCGuCCGAGCGGCa -5'
23896 5' -61.1 NC_005262.1 + 34994 0.68 0.359984
Target:  5'- aGGcaGCCGggCAGCAGCgcGGGCcCGuCCGUa -3'
miRNA:   3'- gCC--UGGCa-GUCGUCG--UCCGaGC-GGCA- -5'
23896 5' -61.1 NC_005262.1 + 60503 0.74 0.13618
Target:  5'- cCGGGCCGcgCGGC-GCAGGC-CGCCa- -3'
miRNA:   3'- -GCCUGGCa-GUCGuCGUCCGaGCGGca -5'
23896 5' -61.1 NC_005262.1 + 45396 0.73 0.15136
Target:  5'- uGGGCgGcgCAGCAGCAGGCa-GCCGc -3'
miRNA:   3'- gCCUGgCa-GUCGUCGUCCGagCGGCa -5'
23896 5' -61.1 NC_005262.1 + 32332 0.72 0.181653
Target:  5'- uGGGCCGUCA--GGCAGGCgugaUCGCCu- -3'
miRNA:   3'- gCCUGGCAGUcgUCGUCCG----AGCGGca -5'
23896 5' -61.1 NC_005262.1 + 5017 0.71 0.20647
Target:  5'- uCGGcuGCCucCAGCGGCAGuuGCUCGCCGg -3'
miRNA:   3'- -GCC--UGGcaGUCGUCGUC--CGAGCGGCa -5'
23896 5' -61.1 NC_005262.1 + 54839 0.69 0.284895
Target:  5'- uGGACCGaCAcGCAGCGcgccgaccGGCUCGUCa- -3'
miRNA:   3'- gCCUGGCaGU-CGUCGU--------CCGAGCGGca -5'
23896 5' -61.1 NC_005262.1 + 6276 0.69 0.284895
Target:  5'- -uGAUgGUCAGCAGCucGGCcuUCGCCGc -3'
miRNA:   3'- gcCUGgCAGUCGUCGu-CCG--AGCGGCa -5'
23896 5' -61.1 NC_005262.1 + 43836 0.68 0.351886
Target:  5'- gCGGGCCGgccgCGcGCGGC-GGUgCGCCGg -3'
miRNA:   3'- -GCCUGGCa---GU-CGUCGuCCGaGCGGCa -5'
23896 5' -61.1 NC_005262.1 + 57209 0.68 0.351886
Target:  5'- cCGGACCugccgGUCGGCGGCAucGCgacgcgCGCCGc -3'
miRNA:   3'- -GCCUGG-----CAGUCGUCGUc-CGa-----GCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.