miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23897 3' -60.5 NC_005262.1 + 43691 0.66 0.505889
Target:  5'- aGCCgGgCCGaauucGCGCGGCGAcgCG-Cu -3'
miRNA:   3'- gCGGgCgGGUa----CGCGCCGCUuaGCuG- -5'
23897 3' -60.5 NC_005262.1 + 56447 0.66 0.505889
Target:  5'- gGCgaCGCCUAaGCGCGGCu-AUCGGg -3'
miRNA:   3'- gCGg-GCGGGUaCGCGCCGcuUAGCUg -5'
23897 3' -60.5 NC_005262.1 + 42153 0.66 0.505889
Target:  5'- gCGCCgGgCCcgGuCGCGGCcGAUCGuCu -3'
miRNA:   3'- -GCGGgCgGGuaC-GCGCCGcUUAGCuG- -5'
23897 3' -60.5 NC_005262.1 + 17334 0.66 0.505889
Target:  5'- gCGCgaGCgCGU-CGCGGCGAuccgcgagaagAUCGACg -3'
miRNA:   3'- -GCGggCGgGUAcGCGCCGCU-----------UAGCUG- -5'
23897 3' -60.5 NC_005262.1 + 56944 0.66 0.504893
Target:  5'- gCGCaCGCCgAUccGCGCgGGCGAguucgcgggcgugGUCGGCa -3'
miRNA:   3'- -GCGgGCGGgUA--CGCG-CCGCU-------------UAGCUG- -5'
23897 3' -60.5 NC_005262.1 + 41415 0.66 0.495976
Target:  5'- gCGCCgGCaCCucguAUGCGCcgacuaacacgGGCGGcgCGGCu -3'
miRNA:   3'- -GCGGgCG-GG----UACGCG-----------CCGCUuaGCUG- -5'
23897 3' -60.5 NC_005262.1 + 4681 0.66 0.495976
Target:  5'- gGUUCGCCUcgGCGCGGUaguAGUCGu- -3'
miRNA:   3'- gCGGGCGGGuaCGCGCCGc--UUAGCug -5'
23897 3' -60.5 NC_005262.1 + 37818 0.66 0.494989
Target:  5'- uGCCCGCCguguacUGCGCGaGCGGcaacaagguguucAUCGGu -3'
miRNA:   3'- gCGGGCGGgu----ACGCGC-CGCU-------------UAGCUg -5'
23897 3' -60.5 NC_005262.1 + 45765 0.66 0.486151
Target:  5'- aCGCgaCGCCgAUcggcauCGCGGCGAAgggCGGCg -3'
miRNA:   3'- -GCGg-GCGGgUAc-----GCGCCGCUUa--GCUG- -5'
23897 3' -60.5 NC_005262.1 + 1887 0.66 0.486151
Target:  5'- cCGCCCcauuGCCCGUgccuucgaGCGgGGCGGAgggugCGGg -3'
miRNA:   3'- -GCGGG----CGGGUA--------CGCgCCGCUUa----GCUg -5'
23897 3' -60.5 NC_005262.1 + 24574 0.66 0.486151
Target:  5'- gCGUCCGUcgCCGUGuCGCGGUGcgcUGACa -3'
miRNA:   3'- -GCGGGCG--GGUAC-GCGCCGCuuaGCUG- -5'
23897 3' -60.5 NC_005262.1 + 41561 0.66 0.486151
Target:  5'- gGCCgGCCg--GCGUGGgCGGcgCGGCc -3'
miRNA:   3'- gCGGgCGGguaCGCGCC-GCUuaGCUG- -5'
23897 3' -60.5 NC_005262.1 + 23387 0.66 0.486151
Target:  5'- aGgUCGCCgAcGCGCGGCuGAAUCcGCg -3'
miRNA:   3'- gCgGGCGGgUaCGCGCCG-CUUAGcUG- -5'
23897 3' -60.5 NC_005262.1 + 38914 0.66 0.486151
Target:  5'- aGCUCGCCUucacGCGcCGGCGGAUgcACa -3'
miRNA:   3'- gCGGGCGGGua--CGC-GCCGCUUAgcUG- -5'
23897 3' -60.5 NC_005262.1 + 4410 0.66 0.47642
Target:  5'- uCGCgCGCCUGcUGCGCGaGCGccuggagcUCGGCg -3'
miRNA:   3'- -GCGgGCGGGU-ACGCGC-CGCuu------AGCUG- -5'
23897 3' -60.5 NC_005262.1 + 21807 0.66 0.47642
Target:  5'- gCGUUCGUCgCGuucUGCGCGGCGGuGUCaGGCa -3'
miRNA:   3'- -GCGGGCGG-GU---ACGCGCCGCU-UAG-CUG- -5'
23897 3' -60.5 NC_005262.1 + 56331 0.66 0.47642
Target:  5'- aGCCCGCUg--GCGUGGCaAGaCGGCu -3'
miRNA:   3'- gCGGGCGGguaCGCGCCGcUUaGCUG- -5'
23897 3' -60.5 NC_005262.1 + 17490 0.66 0.47642
Target:  5'- aGCgCGCgCCGcGCGCGacGCGucGAUCGGCa -3'
miRNA:   3'- gCGgGCG-GGUaCGCGC--CGC--UUAGCUG- -5'
23897 3' -60.5 NC_005262.1 + 24884 0.66 0.47642
Target:  5'- cCGCCgGCgCGUGacaGGCGAGcUCGGCc -3'
miRNA:   3'- -GCGGgCGgGUACgcgCCGCUU-AGCUG- -5'
23897 3' -60.5 NC_005262.1 + 48474 0.66 0.466787
Target:  5'- uCGCgaGCCgCGUGgGCacgGGCGGcgCGACg -3'
miRNA:   3'- -GCGggCGG-GUACgCG---CCGCUuaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.