miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23897 5' -53.9 NC_005262.1 + 35997 0.66 0.851208
Target:  5'- uGCGuUCCAcgUGCCGCG-CG-AGUGCc-- -3'
miRNA:   3'- -CGU-AGGU--ACGGCGCaGCuUCACGucc -5'
23897 5' -53.9 NC_005262.1 + 33019 0.66 0.842664
Target:  5'- gGC-UCCuuaGCCGCG-CGAGGcgagGUAGGc -3'
miRNA:   3'- -CGuAGGua-CGGCGCaGCUUCa---CGUCC- -5'
23897 5' -53.9 NC_005262.1 + 10641 0.66 0.842664
Target:  5'- gGCGgguugCCGaucGCCGCGUCGAAGaacucGCGcGGc -3'
miRNA:   3'- -CGUa----GGUa--CGGCGCAGCUUCa----CGU-CC- -5'
23897 5' -53.9 NC_005262.1 + 6226 0.66 0.841797
Target:  5'- uCAUCCGgaGCCGCGUCGAAcgucucgaugcgcGUGaCcGGu -3'
miRNA:   3'- cGUAGGUa-CGGCGCAGCUU-------------CAC-GuCC- -5'
23897 5' -53.9 NC_005262.1 + 40759 0.66 0.840929
Target:  5'- aGUAUCCG-GCUGCGUCGAugaacuccacGCGGa -3'
miRNA:   3'- -CGUAGGUaCGGCGCAGCUuca-------CGUCc -5'
23897 5' -53.9 NC_005262.1 + 34965 0.66 0.833901
Target:  5'- cGCGgcgCUcgGCCGCaaGUCGAAGcucCAGGc -3'
miRNA:   3'- -CGUa--GGuaCGGCG--CAGCUUCac-GUCC- -5'
23897 5' -53.9 NC_005262.1 + 15139 0.66 0.833901
Target:  5'- cGCAUCgCG-GCCgGCGUCGAgucGGcGCGGa -3'
miRNA:   3'- -CGUAG-GUaCGG-CGCAGCU---UCaCGUCc -5'
23897 5' -53.9 NC_005262.1 + 9993 0.66 0.824929
Target:  5'- ---cCCGUGCCGCuGUCGAccUGCaucAGGu -3'
miRNA:   3'- cguaGGUACGGCG-CAGCUucACG---UCC- -5'
23897 5' -53.9 NC_005262.1 + 15364 0.66 0.815756
Target:  5'- cGCGUggUCAUGCCGcCGUCcGucGUGUucGGGa -3'
miRNA:   3'- -CGUA--GGUACGGC-GCAG-CuuCACG--UCC- -5'
23897 5' -53.9 NC_005262.1 + 12243 0.66 0.815756
Target:  5'- aGCAUgCG-GUCGCGUCGAuGGU-CGGGc -3'
miRNA:   3'- -CGUAgGUaCGGCGCAGCU-UCAcGUCC- -5'
23897 5' -53.9 NC_005262.1 + 18799 0.66 0.806392
Target:  5'- gGCGUCCGccgccUGCCGCG-CGGAcUGCu-- -3'
miRNA:   3'- -CGUAGGU-----ACGGCGCaGCUUcACGucc -5'
23897 5' -53.9 NC_005262.1 + 45061 0.66 0.806392
Target:  5'- cGCG-CCGaGCCGCGcCGAAGcUG-AGGa -3'
miRNA:   3'- -CGUaGGUaCGGCGCaGCUUC-ACgUCC- -5'
23897 5' -53.9 NC_005262.1 + 1898 0.67 0.787134
Target:  5'- ---cCCGUGCCuucgaGCGgggCGGagGGUGCGGGu -3'
miRNA:   3'- cguaGGUACGG-----CGCa--GCU--UCACGUCC- -5'
23897 5' -53.9 NC_005262.1 + 58428 0.67 0.787134
Target:  5'- cGCGUCCcUGCC-CGUC-AAGgacgccccgGCAGGc -3'
miRNA:   3'- -CGUAGGuACGGcGCAGcUUCa--------CGUCC- -5'
23897 5' -53.9 NC_005262.1 + 11619 0.67 0.77726
Target:  5'- cGCuggUCAUGCCcucgGCGUCGAGGc-CGGGg -3'
miRNA:   3'- -CGua-GGUACGG----CGCAGCUUCacGUCC- -5'
23897 5' -53.9 NC_005262.1 + 34816 0.67 0.77726
Target:  5'- cUcgCCGUGCUGCuGgaaggCGAGGcGCAGGu -3'
miRNA:   3'- cGuaGGUACGGCG-Ca----GCUUCaCGUCC- -5'
23897 5' -53.9 NC_005262.1 + 5159 0.67 0.774269
Target:  5'- cGCG-CCcgGCCGC-UCGAcugccgagccugacGGUGCAGc -3'
miRNA:   3'- -CGUaGGuaCGGCGcAGCU--------------UCACGUCc -5'
23897 5' -53.9 NC_005262.1 + 14163 0.67 0.767239
Target:  5'- -uGUCC--GCCGCGcCGAggAGUGCGGc -3'
miRNA:   3'- cgUAGGuaCGGCGCaGCU--UCACGUCc -5'
23897 5' -53.9 NC_005262.1 + 60247 0.67 0.767239
Target:  5'- cGCGUCaagGCCGCGauacgcCGGcAGUGuCAGGg -3'
miRNA:   3'- -CGUAGguaCGGCGCa-----GCU-UCAC-GUCC- -5'
23897 5' -53.9 NC_005262.1 + 25529 0.68 0.746794
Target:  5'- aGCAUCCGcGUCGCGaCGuccGUGCGcGGc -3'
miRNA:   3'- -CGUAGGUaCGGCGCaGCuu-CACGU-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.