Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23897 | 5' | -53.9 | NC_005262.1 | + | 24573 | 0.81 | 0.144966 |
Target: 5'- cGCGUCCGUcGCCGUGUCGcGGUGCGc- -3' miRNA: 3'- -CGUAGGUA-CGGCGCAGCuUCACGUcc -5' |
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23897 | 5' | -53.9 | NC_005262.1 | + | 35997 | 0.66 | 0.851208 |
Target: 5'- uGCGuUCCAcgUGCCGCG-CG-AGUGCc-- -3' miRNA: 3'- -CGU-AGGU--ACGGCGCaGCuUCACGucc -5' |
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23897 | 5' | -53.9 | NC_005262.1 | + | 34965 | 0.66 | 0.833901 |
Target: 5'- cGCGgcgCUcgGCCGCaaGUCGAAGcucCAGGc -3' miRNA: 3'- -CGUa--GGuaCGGCG--CAGCUUCac-GUCC- -5' |
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23897 | 5' | -53.9 | NC_005262.1 | + | 15139 | 0.66 | 0.833901 |
Target: 5'- cGCAUCgCG-GCCgGCGUCGAgucGGcGCGGa -3' miRNA: 3'- -CGUAG-GUaCGG-CGCAGCU---UCaCGUCc -5' |
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23897 | 5' | -53.9 | NC_005262.1 | + | 12243 | 0.66 | 0.815756 |
Target: 5'- aGCAUgCG-GUCGCGUCGAuGGU-CGGGc -3' miRNA: 3'- -CGUAgGUaCGGCGCAGCU-UCAcGUCC- -5' |
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23897 | 5' | -53.9 | NC_005262.1 | + | 1898 | 0.67 | 0.787134 |
Target: 5'- ---cCCGUGCCuucgaGCGgggCGGagGGUGCGGGu -3' miRNA: 3'- cguaGGUACGG-----CGCa--GCU--UCACGUCC- -5' |
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23897 | 5' | -53.9 | NC_005262.1 | + | 58428 | 0.67 | 0.787134 |
Target: 5'- cGCGUCCcUGCC-CGUC-AAGgacgccccgGCAGGc -3' miRNA: 3'- -CGUAGGuACGGcGCAGcUUCa--------CGUCC- -5' |
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23897 | 5' | -53.9 | NC_005262.1 | + | 14163 | 0.67 | 0.767239 |
Target: 5'- -uGUCC--GCCGCGcCGAggAGUGCGGc -3' miRNA: 3'- cgUAGGuaCGGCGCaGCU--UCACGUCc -5' |
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23897 | 5' | -53.9 | NC_005262.1 | + | 25529 | 0.68 | 0.746794 |
Target: 5'- aGCAUCCGcGUCGCGaCGuccGUGCGcGGc -3' miRNA: 3'- -CGUAGGUaCGGCGCaGCuu-CACGU-CC- -5' |
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23897 | 5' | -53.9 | NC_005262.1 | + | 40813 | 0.71 | 0.53866 |
Target: 5'- gGCAUCUAcgggGCUGCGaCGGgcaucagcauucagGGUGCGGGg -3' miRNA: 3'- -CGUAGGUa---CGGCGCaGCU--------------UCACGUCC- -5' |
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23897 | 5' | -53.9 | NC_005262.1 | + | 34030 | 0.71 | 0.531247 |
Target: 5'- cGCAUCgugcGCCGCGUCGAucgGCAGu -3' miRNA: 3'- -CGUAGgua-CGGCGCAGCUucaCGUCc -5' |
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23897 | 5' | -53.9 | NC_005262.1 | + | 4701 | 0.71 | 0.520721 |
Target: 5'- gGCAUCCAgucGuuGCG-C-AAGUGCGGGu -3' miRNA: 3'- -CGUAGGUa--CggCGCaGcUUCACGUCC- -5' |
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23897 | 5' | -53.9 | NC_005262.1 | + | 25644 | 0.75 | 0.341605 |
Target: 5'- cCAUCCcgGCCGUGcCGAAGU-CGGGc -3' miRNA: 3'- cGUAGGuaCGGCGCaGCUUCAcGUCC- -5' |
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23897 | 5' | -53.9 | NC_005262.1 | + | 53704 | 0.76 | 0.287795 |
Target: 5'- cGCAgaaCCcgGCCGCGUCGAAG-GCcguGGc -3' miRNA: 3'- -CGUa--GGuaCGGCGCAGCUUCaCGu--CC- -5' |
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23897 | 5' | -53.9 | NC_005262.1 | + | 15364 | 0.66 | 0.815756 |
Target: 5'- cGCGUggUCAUGCCGcCGUCcGucGUGUucGGGa -3' miRNA: 3'- -CGUA--GGUACGGC-GCAG-CuuCACG--UCC- -5' |
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23897 | 5' | -53.9 | NC_005262.1 | + | 9993 | 0.66 | 0.824929 |
Target: 5'- ---cCCGUGCCGCuGUCGAccUGCaucAGGu -3' miRNA: 3'- cguaGGUACGGCG-CAGCUucACG---UCC- -5' |
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23897 | 5' | -53.9 | NC_005262.1 | + | 40759 | 0.66 | 0.840929 |
Target: 5'- aGUAUCCG-GCUGCGUCGAugaacuccacGCGGa -3' miRNA: 3'- -CGUAGGUaCGGCGCAGCUuca-------CGUCc -5' |
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23897 | 5' | -53.9 | NC_005262.1 | + | 6226 | 0.66 | 0.841797 |
Target: 5'- uCAUCCGgaGCCGCGUCGAAcgucucgaugcgcGUGaCcGGu -3' miRNA: 3'- cGUAGGUa-CGGCGCAGCUU-------------CAC-GuCC- -5' |
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23897 | 5' | -53.9 | NC_005262.1 | + | 33019 | 0.66 | 0.842664 |
Target: 5'- gGC-UCCuuaGCCGCG-CGAGGcgagGUAGGc -3' miRNA: 3'- -CGuAGGua-CGGCGCaGCUUCa---CGUCC- -5' |
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23897 | 5' | -53.9 | NC_005262.1 | + | 48527 | 1.12 | 0.00109 |
Target: 5'- aGCAUCCAUGCCGCGUCGAAGUGCAGGc -3' miRNA: 3'- -CGUAGGUACGGCGCAGCUUCACGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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