miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23898 5' -59.7 NC_005262.1 + 10209 0.66 0.556604
Target:  5'- cGCgGUUGCgaaCaUCCGUCUCG-CGACGa -3'
miRNA:   3'- uCG-CGACGa--GcAGGCAGAGCcGCUGC- -5'
23898 5' -59.7 NC_005262.1 + 14551 0.66 0.556604
Target:  5'- uGCGCUGgaUCGgcaggCGUCUCGccGCGGCGc -3'
miRNA:   3'- uCGCGACg-AGCag---GCAGAGC--CGCUGC- -5'
23898 5' -59.7 NC_005262.1 + 12319 0.66 0.556604
Target:  5'- cGGCauGCgGCUCGUgCCGcagCgcgCGGCGGCa -3'
miRNA:   3'- -UCG--CGaCGAGCA-GGCa--Ga--GCCGCUGc -5'
23898 5' -59.7 NC_005262.1 + 11694 0.66 0.556604
Target:  5'- cGGCGUcGCcgaggUCGUCCGUCaUGGCcuuGGCGu -3'
miRNA:   3'- -UCGCGaCG-----AGCAGGCAGaGCCG---CUGC- -5'
23898 5' -59.7 NC_005262.1 + 12812 0.66 0.556604
Target:  5'- uGGC-CUGCUCGaCCuUCUCcGGCGAg- -3'
miRNA:   3'- -UCGcGACGAGCaGGcAGAG-CCGCUgc -5'
23898 5' -59.7 NC_005262.1 + 6380 0.66 0.556604
Target:  5'- gAGCGUUG-UCGgCCGccuUCUCGGCGGu- -3'
miRNA:   3'- -UCGCGACgAGCaGGC---AGAGCCGCUgc -5'
23898 5' -59.7 NC_005262.1 + 55916 0.66 0.546326
Target:  5'- cGCGCaGUacgUCGaCCGUC-CGGCGAuCGa -3'
miRNA:   3'- uCGCGaCG---AGCaGGCAGaGCCGCU-GC- -5'
23898 5' -59.7 NC_005262.1 + 32321 0.66 0.546326
Target:  5'- uGCGCUGUUCaugggCCGUCa-GGCaGGCGu -3'
miRNA:   3'- uCGCGACGAGca---GGCAGagCCG-CUGC- -5'
23898 5' -59.7 NC_005262.1 + 32685 0.66 0.546326
Target:  5'- cGCGCUGC-CGgccgCCGgcCUCcaggugGGCGACa -3'
miRNA:   3'- uCGCGACGaGCa---GGCa-GAG------CCGCUGc -5'
23898 5' -59.7 NC_005262.1 + 33931 0.66 0.53611
Target:  5'- cGGCGCUcCUCGUCgGUCa-GGcCGGCc -3'
miRNA:   3'- -UCGCGAcGAGCAGgCAGagCC-GCUGc -5'
23898 5' -59.7 NC_005262.1 + 45571 0.66 0.53611
Target:  5'- cGCGCUGCUguaccugaugcggcCGUuuugggaccgccucaCCGUCUacuggcucgacacCGGCGACa -3'
miRNA:   3'- uCGCGACGA--------------GCA---------------GGCAGA-------------GCCGCUGc -5'
23898 5' -59.7 NC_005262.1 + 51368 0.66 0.525961
Target:  5'- uGCGCcgcaucgGCUCGgcuaCCGUCUCGauCGACa -3'
miRNA:   3'- uCGCGa------CGAGCa---GGCAGAGCc-GCUGc -5'
23898 5' -59.7 NC_005262.1 + 42865 0.66 0.525961
Target:  5'- cGCGCggGCUCGUCgacCUCGGCuauGCGa -3'
miRNA:   3'- uCGCGa-CGAGCAGgcaGAGCCGc--UGC- -5'
23898 5' -59.7 NC_005262.1 + 40575 0.66 0.525961
Target:  5'- cGGCGgUGCcgCGaCCGUCgcgcugaCGGUGGCGc -3'
miRNA:   3'- -UCGCgACGa-GCaGGCAGa------GCCGCUGC- -5'
23898 5' -59.7 NC_005262.1 + 46373 0.66 0.519907
Target:  5'- gAGCGCaGgUCGUCCagcguggcgcccagcGUCUCGGCa--- -3'
miRNA:   3'- -UCGCGaCgAGCAGG---------------CAGAGCCGcugc -5'
23898 5' -59.7 NC_005262.1 + 12953 0.66 0.515886
Target:  5'- uGCGCgacgGCaUCG-CCGaccgCUCGGCGuCGa -3'
miRNA:   3'- uCGCGa---CG-AGCaGGCa---GAGCCGCuGC- -5'
23898 5' -59.7 NC_005262.1 + 52985 0.66 0.515886
Target:  5'- uGCGCUGgUCGUgaUCGUCgCGGCaGCu -3'
miRNA:   3'- uCGCGACgAGCA--GGCAGaGCCGcUGc -5'
23898 5' -59.7 NC_005262.1 + 11895 0.66 0.515886
Target:  5'- cGGCGaaGCggUCGgugCCG-UUCGGCGGCGu -3'
miRNA:   3'- -UCGCgaCG--AGCa--GGCaGAGCCGCUGC- -5'
23898 5' -59.7 NC_005262.1 + 5143 0.67 0.505889
Target:  5'- cGGCGCugauccUGCUCGgcgcgCUGa-UCGGUGACGg -3'
miRNA:   3'- -UCGCG------ACGAGCa----GGCagAGCCGCUGC- -5'
23898 5' -59.7 NC_005262.1 + 30877 0.67 0.495976
Target:  5'- aGGCGCUGg-CGagCGUCgcgCGuGCGACGc -3'
miRNA:   3'- -UCGCGACgaGCagGCAGa--GC-CGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.