miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23899 5' -52.2 NC_005262.1 + 48202 0.66 0.906942
Target:  5'- gGACaguaAUAaggGCGCGGUCGGUgGcaUGCAg -3'
miRNA:   3'- -CUGg---UAU---UGCGCCAGCUAgCcaACGU- -5'
23899 5' -52.2 NC_005262.1 + 24088 0.66 0.906942
Target:  5'- cGAUCAgcguCGCGGUCGAUgCGGcgGaCGg -3'
miRNA:   3'- -CUGGUauu-GCGCCAGCUA-GCCaaC-GU- -5'
23899 5' -52.2 NC_005262.1 + 29949 0.66 0.900121
Target:  5'- cGACCcgGACGCGGgCGG-CGGcgaaggUGCc -3'
miRNA:   3'- -CUGGuaUUGCGCCaGCUaGCCa-----ACGu -5'
23899 5' -52.2 NC_005262.1 + 59675 0.66 0.893025
Target:  5'- gGAUCGUGAauUGUGGaCGAUCGGcgUGCc -3'
miRNA:   3'- -CUGGUAUU--GCGCCaGCUAGCCa-ACGu -5'
23899 5' -52.2 NC_005262.1 + 38426 0.66 0.893025
Target:  5'- aGGCCG--GCGCGGUCGAgaucacgcCGGacgacgGCAc -3'
miRNA:   3'- -CUGGUauUGCGCCAGCUa-------GCCaa----CGU- -5'
23899 5' -52.2 NC_005262.1 + 13444 0.66 0.88566
Target:  5'- cGCCGcu-CGCGGUCGucgCGGgcGCu -3'
miRNA:   3'- cUGGUauuGCGCCAGCua-GCCaaCGu -5'
23899 5' -52.2 NC_005262.1 + 2014 0.66 0.87803
Target:  5'- aGGCgAaAACGCgcuGGUCGGUCGGcgcgUGCu -3'
miRNA:   3'- -CUGgUaUUGCG---CCAGCUAGCCa---ACGu -5'
23899 5' -52.2 NC_005262.1 + 6269 0.67 0.861999
Target:  5'- cGACCugauCGCGGUCGAUgccCGGc-GCGa -3'
miRNA:   3'- -CUGGuauuGCGCCAGCUA---GCCaaCGU- -5'
23899 5' -52.2 NC_005262.1 + 10447 0.67 0.861999
Target:  5'- cGAUCAgguucGCGCGGUCGGcgaGGUaGCGg -3'
miRNA:   3'- -CUGGUau---UGCGCCAGCUag-CCAaCGU- -5'
23899 5' -52.2 NC_005262.1 + 30438 0.67 0.861999
Target:  5'- cGGCCG--GCGgGuuGUCGAUCGGcgGCAc -3'
miRNA:   3'- -CUGGUauUGCgC--CAGCUAGCCaaCGU- -5'
23899 5' -52.2 NC_005262.1 + 24727 0.67 0.861999
Target:  5'- uGAUCGcgcUGGCGCGcG-CGAUCGGcgUGCGg -3'
miRNA:   3'- -CUGGU---AUUGCGC-CaGCUAGCCa-ACGU- -5'
23899 5' -52.2 NC_005262.1 + 13232 0.67 0.861999
Target:  5'- gGGCUcgGGCuGCGGUUGAaCGGgUGCGc -3'
miRNA:   3'- -CUGGuaUUG-CGCCAGCUaGCCaACGU- -5'
23899 5' -52.2 NC_005262.1 + 43491 0.67 0.844989
Target:  5'- cGACCGUcuACGCGGaCGGcaaggCGGUcGCAa -3'
miRNA:   3'- -CUGGUAu-UGCGCCaGCUa----GCCAaCGU- -5'
23899 5' -52.2 NC_005262.1 + 58927 0.68 0.808305
Target:  5'- cGACCgAUGGCGCGcGcuucUCGGUCGGcgcGCAg -3'
miRNA:   3'- -CUGG-UAUUGCGC-C----AGCUAGCCaa-CGU- -5'
23899 5' -52.2 NC_005262.1 + 4674 0.69 0.758296
Target:  5'- aGCCAUGcCGCGGcCGgAUCGGgccgcgGCAu -3'
miRNA:   3'- cUGGUAUuGCGCCaGC-UAGCCaa----CGU- -5'
23899 5' -52.2 NC_005262.1 + 12782 0.69 0.737288
Target:  5'- cGAUCAcGGCGCGGUCGc-CGGUcGCu -3'
miRNA:   3'- -CUGGUaUUGCGCCAGCuaGCCAaCGu -5'
23899 5' -52.2 NC_005262.1 + 32636 0.69 0.737288
Target:  5'- cGCCGUAuggcgauuGCGCGGgCGAUCaGGUcUGCGa -3'
miRNA:   3'- cUGGUAU--------UGCGCCaGCUAG-CCA-ACGU- -5'
23899 5' -52.2 NC_005262.1 + 9291 0.72 0.594315
Target:  5'- cACCGUGAUGuCGGUCGGgcccagcggcuUCGGcUGCAc -3'
miRNA:   3'- cUGGUAUUGC-GCCAGCU-----------AGCCaACGU- -5'
23899 5' -52.2 NC_005262.1 + 13982 0.74 0.46613
Target:  5'- -uCCAUcGCGCGGcCGAUCGGgccggacggUGCAg -3'
miRNA:   3'- cuGGUAuUGCGCCaGCUAGCCa--------ACGU- -5'
23899 5' -52.2 NC_005262.1 + 47487 1.08 0.002793
Target:  5'- uGACCAUAACGCGGUCGAUCGGUUGCAc -3'
miRNA:   3'- -CUGGUAUUGCGCCAGCUAGCCAACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.