miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2390 5' -57.6 NC_001416.1 + 43889 0.98 0.003623
Target:  5'- uGAUGAGCGACUCACCACGGGCCA-GGc -3'
miRNA:   3'- -CUACUCGCUGAGUGGUGCCCGGUgCC- -5'
2390 5' -57.6 NC_001416.1 + 21566 0.77 0.121526
Target:  5'- -cUGAGCGGUUCAaCAgGGGCCGCGGg -3'
miRNA:   3'- cuACUCGCUGAGUgGUgCCCGGUGCC- -5'
2390 5' -57.6 NC_001416.1 + 17477 0.68 0.423708
Target:  5'- aGUGAGCGGCuggUCAgCACGG-CC-CGGa -3'
miRNA:   3'- cUACUCGCUG---AGUgGUGCCcGGuGCC- -5'
2390 5' -57.6 NC_001416.1 + 3968 0.66 0.576203
Target:  5'- aGAUGAGCuACUCcacGgCACGGGCaguGCGa -3'
miRNA:   3'- -CUACUCGcUGAG---UgGUGCCCGg--UGCc -5'
2390 5' -57.6 NC_001416.1 + 1196 0.67 0.512777
Target:  5'- uGGUGAGCGugUUAUCcCGGuGCuuuuugccauacCACGGg -3'
miRNA:   3'- -CUACUCGCugAGUGGuGCC-CG------------GUGCC- -5'
2390 5' -57.6 NC_001416.1 + 43952 0.69 0.387193
Target:  5'- uGGUGAGUcGCUCAUCAuCGGGCUuuuUGGc -3'
miRNA:   3'- -CUACUCGcUGAGUGGU-GCCCGGu--GCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.