miRNA display CGI


Results 1 - 20 of 224 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23900 3' -61.3 NC_005262.1 + 51397 0.66 0.509617
Target:  5'- cGCGCCugaccGUGUGCaCcGCGuGCUCgGCGGc -3'
miRNA:   3'- -CGCGG-----CACGCGcGcUGCuCGAG-CGCC- -5'
23900 3' -61.3 NC_005262.1 + 4308 0.66 0.509617
Target:  5'- cGCGCCccucauCGuCGacuaCGGCGAGcCUCGCGGg -3'
miRNA:   3'- -CGCGGcac---GC-GC----GCUGCUC-GAGCGCC- -5'
23900 3' -61.3 NC_005262.1 + 23356 0.66 0.509617
Target:  5'- -gGCCGgcgugaaGCGCGCGGCGgcgaaGGCcCGCa- -3'
miRNA:   3'- cgCGGCa------CGCGCGCUGC-----UCGaGCGcc -5'
23900 3' -61.3 NC_005262.1 + 31950 0.66 0.509617
Target:  5'- -gGCgGUGUG-GCGACGAgcaaggcaucGCUCGCa- -3'
miRNA:   3'- cgCGgCACGCgCGCUGCU----------CGAGCGcc -5'
23900 3' -61.3 NC_005262.1 + 15483 0.66 0.509617
Target:  5'- gGCGCUuacaccgaGCGCGGCG-GCUCGCu- -3'
miRNA:   3'- -CGCGGcacg----CGCGCUGCuCGAGCGcc -5'
23900 3' -61.3 NC_005262.1 + 15996 0.66 0.509617
Target:  5'- uCGgCGUGCaGCGCggcaccgacGACGAGCagGCGa -3'
miRNA:   3'- cGCgGCACG-CGCG---------CUGCUCGagCGCc -5'
23900 3' -61.3 NC_005262.1 + 17494 0.66 0.509617
Target:  5'- cGCGCC--GCGCGCGACGcG-UCGauCGGc -3'
miRNA:   3'- -CGCGGcaCGCGCGCUGCuCgAGC--GCC- -5'
23900 3' -61.3 NC_005262.1 + 11841 0.66 0.509617
Target:  5'- aGCGCag-GCGCGCG-CGAGCg-GCc- -3'
miRNA:   3'- -CGCGgcaCGCGCGCuGCUCGagCGcc -5'
23900 3' -61.3 NC_005262.1 + 33657 0.66 0.509617
Target:  5'- cCGCCG-GCGCuucgGCGACcAGCa-GCGGc -3'
miRNA:   3'- cGCGGCaCGCG----CGCUGcUCGagCGCC- -5'
23900 3' -61.3 NC_005262.1 + 54446 0.66 0.509617
Target:  5'- cGCGCCGaccgGaaguaucaGCGCaacgucgaGGCGcuGCUCGCGGu -3'
miRNA:   3'- -CGCGGCa---Cg-------CGCG--------CUGCu-CGAGCGCC- -5'
23900 3' -61.3 NC_005262.1 + 50387 0.66 0.499865
Target:  5'- aUGuuGUGCcCGCucucGCgGAGCUCGUGGa -3'
miRNA:   3'- cGCggCACGcGCGc---UG-CUCGAGCGCC- -5'
23900 3' -61.3 NC_005262.1 + 7425 0.66 0.499865
Target:  5'- uUGuuGUcGCGCaugaacGCGAUcuGCUCGCGGg -3'
miRNA:   3'- cGCggCA-CGCG------CGCUGcuCGAGCGCC- -5'
23900 3' -61.3 NC_005262.1 + 45631 0.66 0.499865
Target:  5'- gGCGCUc-GCGCGaucaGGCGGGCaCGCGc -3'
miRNA:   3'- -CGCGGcaCGCGCg---CUGCUCGaGCGCc -5'
23900 3' -61.3 NC_005262.1 + 51832 0.66 0.499865
Target:  5'- cGCgGCCGacGUGCGCGAaGuGCUgaagCGCGGc -3'
miRNA:   3'- -CG-CGGCa-CGCGCGCUgCuCGA----GCGCC- -5'
23900 3' -61.3 NC_005262.1 + 52642 0.66 0.494054
Target:  5'- cGCGCgaccgcagagcagaaCGUGCGCauCGuCGAGCUUGUGa -3'
miRNA:   3'- -CGCG---------------GCACGCGc-GCuGCUCGAGCGCc -5'
23900 3' -61.3 NC_005262.1 + 7647 0.66 0.490197
Target:  5'- aCGCCG-GCG-GCGACG-GCUaucuccgcgaGCGGc -3'
miRNA:   3'- cGCGGCaCGCgCGCUGCuCGAg---------CGCC- -5'
23900 3' -61.3 NC_005262.1 + 16280 0.66 0.490197
Target:  5'- aUGCCuUGCuGCGCGcc--GCUCGCGGc -3'
miRNA:   3'- cGCGGcACG-CGCGCugcuCGAGCGCC- -5'
23900 3' -61.3 NC_005262.1 + 12579 0.66 0.490197
Target:  5'- aGCuGCUGcUGcCGC-CGGCGAgGCgUCGCGGa -3'
miRNA:   3'- -CG-CGGC-AC-GCGcGCUGCU-CG-AGCGCC- -5'
23900 3' -61.3 NC_005262.1 + 22206 0.66 0.490197
Target:  5'- aCGCCGggcucGCGCuCGACaAGCUCaCGGc -3'
miRNA:   3'- cGCGGCa----CGCGcGCUGcUCGAGcGCC- -5'
23900 3' -61.3 NC_005262.1 + 29154 0.66 0.490197
Target:  5'- -gGCCGagugGCGCGCGACcauGCgucagGCGGc -3'
miRNA:   3'- cgCGGCa---CGCGCGCUGcu-CGag---CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.