miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23903 5' -60.6 NC_005262.1 + 14034 0.66 0.513634
Target:  5'- cGGCCGgagccucGGGcgCGGGcgccgccgGCgucGGUGCGGCu -3'
miRNA:   3'- -CCGGCa------CCCa-GCCC--------UGac-CUACGCCG- -5'
23903 5' -60.6 NC_005262.1 + 36843 0.66 0.484256
Target:  5'- -uUCGUcGGUCGGGAUguggucgcGGAUagGCGGCg -3'
miRNA:   3'- ccGGCAcCCAGCCCUGa-------CCUA--CGCCG- -5'
23903 5' -60.6 NC_005262.1 + 11018 0.66 0.484256
Target:  5'- cGGCCGUaGcGGUCGGGGaa-GAUGCcGUu -3'
miRNA:   3'- -CCGGCA-C-CCAGCCCUgacCUACGcCG- -5'
23903 5' -60.6 NC_005262.1 + 13513 0.66 0.484256
Target:  5'- cGGCCGUcacGGGcUCGGccGGCgcGGGcgcgcccucguUGCGGCg -3'
miRNA:   3'- -CCGGCA---CCC-AGCC--CUGa-CCU-----------ACGCCG- -5'
23903 5' -60.6 NC_005262.1 + 19300 0.66 0.483291
Target:  5'- uGGCCcagaUGGcguuuucaagcauGUCGGGACUccggggGGAUgaaGCGGCa -3'
miRNA:   3'- -CCGGc---ACC-------------CAGCCCUGA------CCUA---CGCCG- -5'
23903 5' -60.6 NC_005262.1 + 5177 0.68 0.401491
Target:  5'- cGGCCG-GcGUCGcGGGCgcGGgcGCGGCc -3'
miRNA:   3'- -CCGGCaCcCAGC-CCUGa-CCuaCGCCG- -5'
23903 5' -60.6 NC_005262.1 + 23138 0.68 0.401491
Target:  5'- uGCgCGUGGGUCGGGucGCUGacgccGUGCccguGGCc -3'
miRNA:   3'- cCG-GCACCCAGCCC--UGACc----UACG----CCG- -5'
23903 5' -60.6 NC_005262.1 + 17231 0.7 0.292097
Target:  5'- cGUCGUGGucGUCGuGGGCgucgcgGGAgcgGCGGCc -3'
miRNA:   3'- cCGGCACC--CAGC-CCUGa-----CCUa--CGCCG- -5'
23903 5' -60.6 NC_005262.1 + 47407 0.7 0.285243
Target:  5'- cGGCCGgccgGGG-CGGGuucaaaACUGGuugccgaacGCGGCg -3'
miRNA:   3'- -CCGGCa---CCCaGCCC------UGACCua-------CGCCG- -5'
23903 5' -60.6 NC_005262.1 + 40466 0.71 0.271917
Target:  5'- cGGCCGUgcauGGGcCGGG-CUGGuaucugGCGGa -3'
miRNA:   3'- -CCGGCA----CCCaGCCCuGACCua----CGCCg -5'
23903 5' -60.6 NC_005262.1 + 40964 0.77 0.099936
Target:  5'- aGGCUGUcgaacaacGGcGUCGGGuuuCUGGcgGCGGCg -3'
miRNA:   3'- -CCGGCA--------CC-CAGCCCu--GACCuaCGCCG- -5'
23903 5' -60.6 NC_005262.1 + 44902 1.02 0.001554
Target:  5'- aGGCCGU-GGUCGGGACUGGAUGCGGCg -3'
miRNA:   3'- -CCGGCAcCCAGCCCUGACCUACGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.