Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23903 | 5' | -60.6 | NC_005262.1 | + | 40964 | 0.77 | 0.099936 |
Target: 5'- aGGCUGUcgaacaacGGcGUCGGGuuuCUGGcgGCGGCg -3' miRNA: 3'- -CCGGCA--------CC-CAGCCCu--GACCuaCGCCG- -5' |
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23903 | 5' | -60.6 | NC_005262.1 | + | 40466 | 0.71 | 0.271917 |
Target: 5'- cGGCCGUgcauGGGcCGGG-CUGGuaucugGCGGa -3' miRNA: 3'- -CCGGCA----CCCaGCCCuGACCua----CGCCg -5' |
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23903 | 5' | -60.6 | NC_005262.1 | + | 5177 | 0.68 | 0.401491 |
Target: 5'- cGGCCG-GcGUCGcGGGCgcGGgcGCGGCc -3' miRNA: 3'- -CCGGCaCcCAGC-CCUGa-CCuaCGCCG- -5' |
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23903 | 5' | -60.6 | NC_005262.1 | + | 47407 | 0.7 | 0.285243 |
Target: 5'- cGGCCGgccgGGG-CGGGuucaaaACUGGuugccgaacGCGGCg -3' miRNA: 3'- -CCGGCa---CCCaGCCC------UGACCua-------CGCCG- -5' |
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23903 | 5' | -60.6 | NC_005262.1 | + | 17231 | 0.7 | 0.292097 |
Target: 5'- cGUCGUGGucGUCGuGGGCgucgcgGGAgcgGCGGCc -3' miRNA: 3'- cCGGCACC--CAGC-CCUGa-----CCUa--CGCCG- -5' |
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23903 | 5' | -60.6 | NC_005262.1 | + | 23138 | 0.68 | 0.401491 |
Target: 5'- uGCgCGUGGGUCGGGucGCUGacgccGUGCccguGGCc -3' miRNA: 3'- cCG-GCACCCAGCCC--UGACc----UACG----CCG- -5' |
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23903 | 5' | -60.6 | NC_005262.1 | + | 19300 | 0.66 | 0.483291 |
Target: 5'- uGGCCcagaUGGcguuuucaagcauGUCGGGACUccggggGGAUgaaGCGGCa -3' miRNA: 3'- -CCGGc---ACC-------------CAGCCCUGA------CCUA---CGCCG- -5' |
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23903 | 5' | -60.6 | NC_005262.1 | + | 36843 | 0.66 | 0.484256 |
Target: 5'- -uUCGUcGGUCGGGAUguggucgcGGAUagGCGGCg -3' miRNA: 3'- ccGGCAcCCAGCCCUGa-------CCUA--CGCCG- -5' |
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23903 | 5' | -60.6 | NC_005262.1 | + | 11018 | 0.66 | 0.484256 |
Target: 5'- cGGCCGUaGcGGUCGGGGaa-GAUGCcGUu -3' miRNA: 3'- -CCGGCA-C-CCAGCCCUgacCUACGcCG- -5' |
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23903 | 5' | -60.6 | NC_005262.1 | + | 13513 | 0.66 | 0.484256 |
Target: 5'- cGGCCGUcacGGGcUCGGccGGCgcGGGcgcgcccucguUGCGGCg -3' miRNA: 3'- -CCGGCA---CCC-AGCC--CUGa-CCU-----------ACGCCG- -5' |
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23903 | 5' | -60.6 | NC_005262.1 | + | 14034 | 0.66 | 0.513634 |
Target: 5'- cGGCCGgagccucGGGcgCGGGcgccgccgGCgucGGUGCGGCu -3' miRNA: 3'- -CCGGCa------CCCa-GCCC--------UGac-CUACGCCG- -5' |
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23903 | 5' | -60.6 | NC_005262.1 | + | 44902 | 1.02 | 0.001554 |
Target: 5'- aGGCCGU-GGUCGGGACUGGAUGCGGCg -3' miRNA: 3'- -CCGGCAcCCAGCCCUGACCUACGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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