Results 41 - 54 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23904 | 3' | -54.4 | NC_005262.1 | + | 54473 | 0.7 | 0.615955 |
Target: 5'- gUCGAGGCGCU---GCUCGCGgugcaGCCGa -3' miRNA: 3'- -GGCUCUGUGGaagUGAGCGUag---CGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 6643 | 0.7 | 0.594377 |
Target: 5'- gCGGcGGCG-CUUCGaUCGCGUCGCCGu -3' miRNA: 3'- gGCU-CUGUgGAAGUgAGCGUAGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 57501 | 0.71 | 0.54111 |
Target: 5'- aCGAGGCGCCgaagUUCAg-CGUcgCGCCGg -3' miRNA: 3'- gGCUCUGUGG----AAGUgaGCGuaGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 10985 | 0.71 | 0.54111 |
Target: 5'- gCCGGGaACGCCggucgCGCUCGCAcgGCUGa -3' miRNA: 3'- -GGCUC-UGUGGaa---GUGAGCGUagCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 3633 | 0.72 | 0.466583 |
Target: 5'- gCCGAG-CGCCUUCACggcggccggguacuUCGCccaugccuUCGCCGc -3' miRNA: 3'- -GGCUCuGUGGAAGUG--------------AGCGu-------AGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 59127 | 0.72 | 0.479488 |
Target: 5'- gCCGAGGCgaACCggCcggGC-CGCGUCGCCGc -3' miRNA: 3'- -GGCUCUG--UGGaaG---UGaGCGUAGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 60495 | 0.72 | 0.479488 |
Target: 5'- gCGAGACGCCgggccgCGCggCGCAggcCGCCa -3' miRNA: 3'- gGCUCUGUGGaa----GUGa-GCGUa--GCGGc -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 28435 | 0.72 | 0.50991 |
Target: 5'- aUCGGGccGCGCCgugcUCGC-CGUGUCGCCGa -3' miRNA: 3'- -GGCUC--UGUGGa---AGUGaGCGUAGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 53588 | 0.73 | 0.449982 |
Target: 5'- gCGAGACggAUgUUCGCaacCGCGUCGCCGc -3' miRNA: 3'- gGCUCUG--UGgAAGUGa--GCGUAGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 36947 | 0.74 | 0.376546 |
Target: 5'- gCCGAGAuCACCa-CGCUCGCGcCGCUGc -3' miRNA: 3'- -GGCUCU-GUGGaaGUGAGCGUaGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 20404 | 0.74 | 0.376546 |
Target: 5'- uUGAGcucgcCGCCgaUGCUCGCAUCGCCGa -3' miRNA: 3'- gGCUCu----GUGGaaGUGAGCGUAGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 4425 | 0.75 | 0.351168 |
Target: 5'- gCGAG-CGCCUggaGCUCgGCGUUGCCGg -3' miRNA: 3'- gGCUCuGUGGAag-UGAG-CGUAGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 38910 | 0.77 | 0.268768 |
Target: 5'- gCCGAGcuCGCCUUCACgCGCcggcggaugcacAUCGCCGa -3' miRNA: 3'- -GGCUCu-GUGGAAGUGaGCG------------UAGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 44479 | 1.11 | 0.001279 |
Target: 5'- uCCGAGACACCUUCACUCGCAUCGCCGa -3' miRNA: 3'- -GGCUCUGUGGAAGUGAGCGUAGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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