Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23904 | 3' | -54.4 | NC_005262.1 | + | 2921 | 0.7 | 0.594377 |
Target: 5'- gCCGAcuucaucGCGCUUUCGCcgCGCAUUGCCu -3' miRNA: 3'- -GGCUc------UGUGGAAGUGa-GCGUAGCGGc -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 41408 | 0.69 | 0.637587 |
Target: 5'- aUCGucGGCGCCggCAcCUCGUAUgCGCCGa -3' miRNA: 3'- -GGCu-CUGUGGaaGU-GAGCGUA-GCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 51892 | 0.69 | 0.6592 |
Target: 5'- gCCGAGcCGCCgaacggCACcgacCGCuUCGCCGg -3' miRNA: 3'- -GGCUCuGUGGaa----GUGa---GCGuAGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 20442 | 0.69 | 0.648401 |
Target: 5'- gUCGuuguGCGCCUUCGC-CGCGucgaUCGCCGc -3' miRNA: 3'- -GGCuc--UGUGGAAGUGaGCGU----AGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 49978 | 0.69 | 0.680715 |
Target: 5'- aCGAGACAgCggCGCcCGCuccCGCCGa -3' miRNA: 3'- gGCUCUGUgGaaGUGaGCGua-GCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 43870 | 0.68 | 0.691411 |
Target: 5'- aCCucGGCGCgaUCGCgCGCAUgGCCGa -3' miRNA: 3'- -GGcuCUGUGgaAGUGaGCGUAgCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 24158 | 0.68 | 0.712627 |
Target: 5'- cUCGAG-UGCCUUCACgcgCGCGagggCGUCGg -3' miRNA: 3'- -GGCUCuGUGGAAGUGa--GCGUa---GCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 52326 | 0.68 | 0.702052 |
Target: 5'- uCCGgaacaAGGCGCCgg-ACgCGUAUCGCCGg -3' miRNA: 3'- -GGC-----UCUGUGGaagUGaGCGUAGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 57170 | 0.68 | 0.691411 |
Target: 5'- cCCGGcGACcCCUcgcCGCUCGUGUCGCUc -3' miRNA: 3'- -GGCU-CUGuGGAa--GUGAGCGUAGCGGc -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 48302 | 0.68 | 0.712627 |
Target: 5'- cUCGAGGCcgGCCUgCGCUa-CAUCGCCu -3' miRNA: 3'- -GGCUCUG--UGGAaGUGAgcGUAGCGGc -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 27481 | 0.67 | 0.784871 |
Target: 5'- gCGAGcGCACCggccccccaccgaagUCGaccgaggugUUCGCGUCGCCGc -3' miRNA: 3'- gGCUC-UGUGGa--------------AGU---------GAGCGUAGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 4869 | 0.67 | 0.783898 |
Target: 5'- aCCGAGaagcgcGCGCCaUCGgUCGgGcCGCCGg -3' miRNA: 3'- -GGCUC------UGUGGaAGUgAGCgUaGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 59223 | 0.67 | 0.764135 |
Target: 5'- cCCGAGcaGCGCCgcCGCUgGCGcgagaugCGCCGc -3' miRNA: 3'- -GGCUC--UGUGGaaGUGAgCGUa------GCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 16877 | 0.67 | 0.764135 |
Target: 5'- uCCaGGcuuGCGCCUUCGC-CGgAUCGCCc -3' miRNA: 3'- -GGcUC---UGUGGAAGUGaGCgUAGCGGc -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 41288 | 0.67 | 0.791637 |
Target: 5'- gCGGGACuGCCgcuucgcgaucCGCUCGCG-CGCCa -3' miRNA: 3'- gGCUCUG-UGGaa---------GUGAGCGUaGCGGc -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 58704 | 0.67 | 0.793557 |
Target: 5'- aCCGGGcgcGCACCgccgagcCGgUCGCAcgCGCCGc -3' miRNA: 3'- -GGCUC---UGUGGaa-----GUgAGCGUa-GCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 59623 | 0.67 | 0.780971 |
Target: 5'- gCGAGAagaACCUcgcgcgccagucucUC-CUCGCGcuggUCGCCGa -3' miRNA: 3'- gGCUCUg--UGGA--------------AGuGAGCGU----AGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 3413 | 0.67 | 0.764135 |
Target: 5'- aUCGAGACGgCga-GC-CGCAUCGCUu -3' miRNA: 3'- -GGCUCUGUgGaagUGaGCGUAGCGGc -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 22199 | 0.67 | 0.764135 |
Target: 5'- gCCGAGaACGCCgggcucgCGCUCgacaagcucacgGCcgCGCCGc -3' miRNA: 3'- -GGCUC-UGUGGaa-----GUGAG------------CGuaGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 40898 | 0.67 | 0.764135 |
Target: 5'- aCGAGAaccgacCACCg-UACUCGCccUCGCCGu -3' miRNA: 3'- gGCUCU------GUGGaaGUGAGCGu-AGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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