miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23904 3' -54.4 NC_005262.1 + 2921 0.7 0.594377
Target:  5'- gCCGAcuucaucGCGCUUUCGCcgCGCAUUGCCu -3'
miRNA:   3'- -GGCUc------UGUGGAAGUGa-GCGUAGCGGc -5'
23904 3' -54.4 NC_005262.1 + 3413 0.67 0.764135
Target:  5'- aUCGAGACGgCga-GC-CGCAUCGCUu -3'
miRNA:   3'- -GGCUCUGUgGaagUGaGCGUAGCGGc -5'
23904 3' -54.4 NC_005262.1 + 3633 0.72 0.466583
Target:  5'- gCCGAG-CGCCUUCACggcggccggguacuUCGCccaugccuUCGCCGc -3'
miRNA:   3'- -GGCUCuGUGGAAGUG--------------AGCGu-------AGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 4425 0.75 0.351168
Target:  5'- gCGAG-CGCCUggaGCUCgGCGUUGCCGg -3'
miRNA:   3'- gGCUCuGUGGAag-UGAG-CGUAGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 4869 0.67 0.783898
Target:  5'- aCCGAGaagcgcGCGCCaUCGgUCGgGcCGCCGg -3'
miRNA:   3'- -GGCUC------UGUGGaAGUgAGCgUaGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 6643 0.7 0.594377
Target:  5'- gCGGcGGCG-CUUCGaUCGCGUCGCCGu -3'
miRNA:   3'- gGCU-CUGUgGAAGUgAGCGUAGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 7024 0.66 0.830462
Target:  5'- uUCGguGGACGucagguCCUUCGCgCGCAUCGCg- -3'
miRNA:   3'- -GGC--UCUGU------GGAAGUGaGCGUAGCGgc -5'
23904 3' -54.4 NC_005262.1 + 10985 0.71 0.54111
Target:  5'- gCCGGGaACGCCggucgCGCUCGCAcgGCUGa -3'
miRNA:   3'- -GGCUC-UGUGGaa---GUGAGCGUagCGGC- -5'
23904 3' -54.4 NC_005262.1 + 11484 0.66 0.839208
Target:  5'- gCGAG-CACauggGC-CGCGUCGCCGa -3'
miRNA:   3'- gGCUCuGUGgaagUGaGCGUAGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 12768 0.7 0.615955
Target:  5'- cCCGucguucGACACgaUCACggCGCGgUCGCCGg -3'
miRNA:   3'- -GGCu-----CUGUGgaAGUGa-GCGU-AGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 13395 0.7 0.594377
Target:  5'- uCCGcGGCGCUgaUCGCcgcgcgguUCGCGUCGCCa -3'
miRNA:   3'- -GGCuCUGUGGa-AGUG--------AGCGUAGCGGc -5'
23904 3' -54.4 NC_005262.1 + 14398 0.66 0.826013
Target:  5'- gCCGAacagaccaguugcGACGCCcgcggugaugaaCGCgCGCGUCGCCGa -3'
miRNA:   3'- -GGCU-------------CUGUGGaa----------GUGaGCGUAGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 16877 0.67 0.764135
Target:  5'- uCCaGGcuuGCGCCUUCGC-CGgAUCGCCc -3'
miRNA:   3'- -GGcUC---UGUGGAAGUGaGCgUAGCGGc -5'
23904 3' -54.4 NC_005262.1 + 17021 0.66 0.803052
Target:  5'- gCCGuuGAUACCg-----CGCGUCGCCGc -3'
miRNA:   3'- -GGCu-CUGUGGaagugaGCGUAGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 20404 0.74 0.376546
Target:  5'- uUGAGcucgcCGCCgaUGCUCGCAUCGCCGa -3'
miRNA:   3'- gGCUCu----GUGGaaGUGAGCGUAGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 20442 0.69 0.648401
Target:  5'- gUCGuuguGCGCCUUCGC-CGCGucgaUCGCCGc -3'
miRNA:   3'- -GGCuc--UGUGGAAGUGaGCGU----AGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 22199 0.67 0.764135
Target:  5'- gCCGAGaACGCCgggcucgCGCUCgacaagcucacgGCcgCGCCGc -3'
miRNA:   3'- -GGCUC-UGUGGaa-----GUGAG------------CGuaGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 24158 0.68 0.712627
Target:  5'- cUCGAG-UGCCUUCACgcgCGCGagggCGUCGg -3'
miRNA:   3'- -GGCUCuGUGGAAGUGa--GCGUa---GCGGC- -5'
23904 3' -54.4 NC_005262.1 + 27481 0.67 0.784871
Target:  5'- gCGAGcGCACCggccccccaccgaagUCGaccgaggugUUCGCGUCGCCGc -3'
miRNA:   3'- gGCUC-UGUGGa--------------AGU---------GAGCGUAGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 28435 0.72 0.50991
Target:  5'- aUCGGGccGCGCCgugcUCGC-CGUGUCGCCGa -3'
miRNA:   3'- -GGCUC--UGUGGa---AGUGaGCGUAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.