Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23904 | 3' | -54.4 | NC_005262.1 | + | 28814 | 0.66 | 0.839208 |
Target: 5'- cCCGc-GCAUCUcgaGCUCGCGUCGCg- -3' miRNA: 3'- -GGCucUGUGGAag-UGAGCGUAGCGgc -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 28843 | 0.66 | 0.821515 |
Target: 5'- gCCGAG-CGCCgcgUCgaACUUGC--CGCCGa -3' miRNA: 3'- -GGCUCuGUGGa--AG--UGAGCGuaGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 30959 | 0.66 | 0.812375 |
Target: 5'- gCCGAa--ACCUugUCGC-CGaCGUCGCCGg -3' miRNA: 3'- -GGCUcugUGGA--AGUGaGC-GUAGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 33278 | 0.7 | 0.615955 |
Target: 5'- gCGAGGCguACCgcaUCGCgCGCA-CGCCGg -3' miRNA: 3'- gGCUCUG--UGGa--AGUGaGCGUaGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 33595 | 0.66 | 0.838343 |
Target: 5'- aUCGAGGcCACCgcagUCGCcccgacgUCGCAggaaaagcCGCCGg -3' miRNA: 3'- -GGCUCU-GUGGa---AGUG-------AGCGUa-------GCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 33649 | 0.66 | 0.803052 |
Target: 5'- uCCGAGGCugaCgagcgCGcCUCGCugGUCGCCGc -3' miRNA: 3'- -GGCUCUGug-Gaa---GU-GAGCG--UAGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 33863 | 0.67 | 0.7581 |
Target: 5'- uCCGGGuCGuCCUUCagGCuaucgccgagcguggUCGCAUCGCCc -3' miRNA: 3'- -GGCUCuGU-GGAAG--UG---------------AGCGUAGCGGc -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 34286 | 0.66 | 0.812375 |
Target: 5'- uUGAcGGCACCgacgCcCUCGCGgaUCGCCa -3' miRNA: 3'- gGCU-CUGUGGaa--GuGAGCGU--AGCGGc -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 36947 | 0.74 | 0.376546 |
Target: 5'- gCCGAGAuCACCa-CGCUCGCGcCGCUGc -3' miRNA: 3'- -GGCUCU-GUGGaaGUGAGCGUaGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 38910 | 0.77 | 0.268768 |
Target: 5'- gCCGAGcuCGCCUUCACgCGCcggcggaugcacAUCGCCGa -3' miRNA: 3'- -GGCUCu-GUGGAAGUGaGCG------------UAGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 40898 | 0.67 | 0.764135 |
Target: 5'- aCGAGAaccgacCACCg-UACUCGCccUCGCCGu -3' miRNA: 3'- gGCUCU------GUGGaaGUGAGCGu-AGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 40966 | 0.7 | 0.626769 |
Target: 5'- aCGAG-CGCCUUCGC-CGCgaaguaGUCGCgGa -3' miRNA: 3'- gGCUCuGUGGAAGUGaGCG------UAGCGgC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 41288 | 0.67 | 0.791637 |
Target: 5'- gCGGGACuGCCgcuucgcgaucCGCUCGCG-CGCCa -3' miRNA: 3'- gGCUCUG-UGGaa---------GUGAGCGUaGCGGc -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 41408 | 0.69 | 0.637587 |
Target: 5'- aUCGucGGCGCCggCAcCUCGUAUgCGCCGa -3' miRNA: 3'- -GGCu-CUGUGGaaGU-GAGCGUA-GCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 43870 | 0.68 | 0.691411 |
Target: 5'- aCCucGGCGCgaUCGCgCGCAUgGCCGa -3' miRNA: 3'- -GGcuCUGUGgaAGUGaGCGUAgCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 44479 | 1.11 | 0.001279 |
Target: 5'- uCCGAGACACCUUCACUCGCAUCGCCGa -3' miRNA: 3'- -GGCUCUGUGGAAGUGAGCGUAGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 45551 | 0.66 | 0.839208 |
Target: 5'- uCCGGcGGCAaggaUUCGCUCGCGcUGCUGu -3' miRNA: 3'- -GGCU-CUGUgg--AAGUGAGCGUaGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 48302 | 0.68 | 0.712627 |
Target: 5'- cUCGAGGCcgGCCUgCGCUa-CAUCGCCu -3' miRNA: 3'- -GGCUCUG--UGGAaGUGAgcGUAGCGGc -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 49771 | 0.7 | 0.594377 |
Target: 5'- cCCGAGGCuCCggcCGCU-GCcgCGCCGg -3' miRNA: 3'- -GGCUCUGuGGaa-GUGAgCGuaGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 49978 | 0.69 | 0.680715 |
Target: 5'- aCGAGACAgCggCGCcCGCuccCGCCGa -3' miRNA: 3'- gGCUCUGUgGaaGUGaGCGua-GCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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