miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23904 3' -54.4 NC_005262.1 + 60495 0.72 0.479488
Target:  5'- gCGAGACGCCgggccgCGCggCGCAggcCGCCa -3'
miRNA:   3'- gGCUCUGUGGaa----GUGa-GCGUa--GCGGc -5'
23904 3' -54.4 NC_005262.1 + 59623 0.67 0.780971
Target:  5'- gCGAGAagaACCUcgcgcgccagucucUC-CUCGCGcuggUCGCCGa -3'
miRNA:   3'- gGCUCUg--UGGA--------------AGuGAGCGU----AGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 59223 0.67 0.764135
Target:  5'- cCCGAGcaGCGCCgcCGCUgGCGcgagaugCGCCGc -3'
miRNA:   3'- -GGCUC--UGUGGaaGUGAgCGUa------GCGGC- -5'
23904 3' -54.4 NC_005262.1 + 59127 0.72 0.479488
Target:  5'- gCCGAGGCgaACCggCcggGC-CGCGUCGCCGc -3'
miRNA:   3'- -GGCUCUG--UGGaaG---UGaGCGUAGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 58704 0.67 0.793557
Target:  5'- aCCGGGcgcGCACCgccgagcCGgUCGCAcgCGCCGc -3'
miRNA:   3'- -GGCUC---UGUGGaa-----GUgAGCGUa-GCGGC- -5'
23904 3' -54.4 NC_005262.1 + 58628 0.66 0.812375
Target:  5'- cCCGcGACGCCggccgUCACcgaUCaGCG-CGCCGa -3'
miRNA:   3'- -GGCuCUGUGGa----AGUG---AG-CGUaGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 57501 0.71 0.54111
Target:  5'- aCGAGGCGCCgaagUUCAg-CGUcgCGCCGg -3'
miRNA:   3'- gGCUCUGUGG----AAGUgaGCGuaGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 57170 0.68 0.691411
Target:  5'- cCCGGcGACcCCUcgcCGCUCGUGUCGCUc -3'
miRNA:   3'- -GGCU-CUGuGGAa--GUGAGCGUAGCGGc -5'
23904 3' -54.4 NC_005262.1 + 56791 0.66 0.830462
Target:  5'- aCCGaAGcCGCCgcgCugUUcgaaGCGUCGCCGu -3'
miRNA:   3'- -GGC-UCuGUGGaa-GugAG----CGUAGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 54473 0.7 0.615955
Target:  5'- gUCGAGGCGCU---GCUCGCGgugcaGCCGa -3'
miRNA:   3'- -GGCUCUGUGGaagUGAGCGUag---CGGC- -5'
23904 3' -54.4 NC_005262.1 + 53588 0.73 0.449982
Target:  5'- gCGAGACggAUgUUCGCaacCGCGUCGCCGc -3'
miRNA:   3'- gGCUCUG--UGgAAGUGa--GCGUAGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 53517 0.7 0.594377
Target:  5'- aCGAGACGCggugccaUUCAgUCGCcuccuugauGUCGCCGc -3'
miRNA:   3'- gGCUCUGUGg------AAGUgAGCG---------UAGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 52326 0.68 0.702052
Target:  5'- uCCGgaacaAGGCGCCgg-ACgCGUAUCGCCGg -3'
miRNA:   3'- -GGC-----UCUGUGGaagUGaGCGUAGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 51892 0.69 0.6592
Target:  5'- gCCGAGcCGCCgaacggCACcgacCGCuUCGCCGg -3'
miRNA:   3'- -GGCUCuGUGGaa----GUGa---GCGuAGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 49978 0.69 0.680715
Target:  5'- aCGAGACAgCggCGCcCGCuccCGCCGa -3'
miRNA:   3'- gGCUCUGUgGaaGUGaGCGua-GCGGC- -5'
23904 3' -54.4 NC_005262.1 + 49771 0.7 0.594377
Target:  5'- cCCGAGGCuCCggcCGCU-GCcgCGCCGg -3'
miRNA:   3'- -GGCUCUGuGGaa-GUGAgCGuaGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 48302 0.68 0.712627
Target:  5'- cUCGAGGCcgGCCUgCGCUa-CAUCGCCu -3'
miRNA:   3'- -GGCUCUG--UGGAaGUGAgcGUAGCGGc -5'
23904 3' -54.4 NC_005262.1 + 45551 0.66 0.839208
Target:  5'- uCCGGcGGCAaggaUUCGCUCGCGcUGCUGu -3'
miRNA:   3'- -GGCU-CUGUgg--AAGUGAGCGUaGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 44479 1.11 0.001279
Target:  5'- uCCGAGACACCUUCACUCGCAUCGCCGa -3'
miRNA:   3'- -GGCUCUGUGGAAGUGAGCGUAGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 43870 0.68 0.691411
Target:  5'- aCCucGGCGCgaUCGCgCGCAUgGCCGa -3'
miRNA:   3'- -GGcuCUGUGgaAGUGaGCGUAgCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.