miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23904 3' -54.4 NC_005262.1 + 41408 0.69 0.637587
Target:  5'- aUCGucGGCGCCggCAcCUCGUAUgCGCCGa -3'
miRNA:   3'- -GGCu-CUGUGGaaGU-GAGCGUA-GCGGC- -5'
23904 3' -54.4 NC_005262.1 + 41288 0.67 0.791637
Target:  5'- gCGGGACuGCCgcuucgcgaucCGCUCGCG-CGCCa -3'
miRNA:   3'- gGCUCUG-UGGaa---------GUGAGCGUaGCGGc -5'
23904 3' -54.4 NC_005262.1 + 40966 0.7 0.626769
Target:  5'- aCGAG-CGCCUUCGC-CGCgaaguaGUCGCgGa -3'
miRNA:   3'- gGCUCuGUGGAAGUGaGCG------UAGCGgC- -5'
23904 3' -54.4 NC_005262.1 + 40898 0.67 0.764135
Target:  5'- aCGAGAaccgacCACCg-UACUCGCccUCGCCGu -3'
miRNA:   3'- gGCUCU------GUGGaaGUGAGCGu-AGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 38910 0.77 0.268768
Target:  5'- gCCGAGcuCGCCUUCACgCGCcggcggaugcacAUCGCCGa -3'
miRNA:   3'- -GGCUCu-GUGGAAGUGaGCG------------UAGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 36947 0.74 0.376546
Target:  5'- gCCGAGAuCACCa-CGCUCGCGcCGCUGc -3'
miRNA:   3'- -GGCUCU-GUGGaaGUGAGCGUaGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 34286 0.66 0.812375
Target:  5'- uUGAcGGCACCgacgCcCUCGCGgaUCGCCa -3'
miRNA:   3'- gGCU-CUGUGGaa--GuGAGCGU--AGCGGc -5'
23904 3' -54.4 NC_005262.1 + 33863 0.67 0.7581
Target:  5'- uCCGGGuCGuCCUUCagGCuaucgccgagcguggUCGCAUCGCCc -3'
miRNA:   3'- -GGCUCuGU-GGAAG--UG---------------AGCGUAGCGGc -5'
23904 3' -54.4 NC_005262.1 + 33649 0.66 0.803052
Target:  5'- uCCGAGGCugaCgagcgCGcCUCGCugGUCGCCGc -3'
miRNA:   3'- -GGCUCUGug-Gaa---GU-GAGCG--UAGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 33595 0.66 0.838343
Target:  5'- aUCGAGGcCACCgcagUCGCcccgacgUCGCAggaaaagcCGCCGg -3'
miRNA:   3'- -GGCUCU-GUGGa---AGUG-------AGCGUa-------GCGGC- -5'
23904 3' -54.4 NC_005262.1 + 33278 0.7 0.615955
Target:  5'- gCGAGGCguACCgcaUCGCgCGCA-CGCCGg -3'
miRNA:   3'- gGCUCUG--UGGa--AGUGaGCGUaGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 30959 0.66 0.812375
Target:  5'- gCCGAa--ACCUugUCGC-CGaCGUCGCCGg -3'
miRNA:   3'- -GGCUcugUGGA--AGUGaGC-GUAGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 28843 0.66 0.821515
Target:  5'- gCCGAG-CGCCgcgUCgaACUUGC--CGCCGa -3'
miRNA:   3'- -GGCUCuGUGGa--AG--UGAGCGuaGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 28814 0.66 0.839208
Target:  5'- cCCGc-GCAUCUcgaGCUCGCGUCGCg- -3'
miRNA:   3'- -GGCucUGUGGAag-UGAGCGUAGCGgc -5'
23904 3' -54.4 NC_005262.1 + 28435 0.72 0.50991
Target:  5'- aUCGGGccGCGCCgugcUCGC-CGUGUCGCCGa -3'
miRNA:   3'- -GGCUC--UGUGGa---AGUGaGCGUAGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 27481 0.67 0.784871
Target:  5'- gCGAGcGCACCggccccccaccgaagUCGaccgaggugUUCGCGUCGCCGc -3'
miRNA:   3'- gGCUC-UGUGGa--------------AGU---------GAGCGUAGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 24158 0.68 0.712627
Target:  5'- cUCGAG-UGCCUUCACgcgCGCGagggCGUCGg -3'
miRNA:   3'- -GGCUCuGUGGAAGUGa--GCGUa---GCGGC- -5'
23904 3' -54.4 NC_005262.1 + 22199 0.67 0.764135
Target:  5'- gCCGAGaACGCCgggcucgCGCUCgacaagcucacgGCcgCGCCGc -3'
miRNA:   3'- -GGCUC-UGUGGaa-----GUGAG------------CGuaGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 20442 0.69 0.648401
Target:  5'- gUCGuuguGCGCCUUCGC-CGCGucgaUCGCCGc -3'
miRNA:   3'- -GGCuc--UGUGGAAGUGaGCGU----AGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 20404 0.74 0.376546
Target:  5'- uUGAGcucgcCGCCgaUGCUCGCAUCGCCGa -3'
miRNA:   3'- gGCUCu----GUGGaaGUGAGCGUAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.