Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23904 | 3' | -54.4 | NC_005262.1 | + | 57501 | 0.71 | 0.54111 |
Target: 5'- aCGAGGCGCCgaagUUCAg-CGUcgCGCCGg -3' miRNA: 3'- gGCUCUGUGG----AAGUgaGCGuaGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 49771 | 0.7 | 0.594377 |
Target: 5'- cCCGAGGCuCCggcCGCU-GCcgCGCCGg -3' miRNA: 3'- -GGCUCUGuGGaa-GUGAgCGuaGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 6643 | 0.7 | 0.594377 |
Target: 5'- gCGGcGGCG-CUUCGaUCGCGUCGCCGu -3' miRNA: 3'- gGCU-CUGUgGAAGUgAGCGUAGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 54473 | 0.7 | 0.615955 |
Target: 5'- gUCGAGGCGCU---GCUCGCGgugcaGCCGa -3' miRNA: 3'- -GGCUCUGUGGaagUGAGCGUag---CGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 33278 | 0.7 | 0.615955 |
Target: 5'- gCGAGGCguACCgcaUCGCgCGCA-CGCCGg -3' miRNA: 3'- gGCUCUG--UGGa--AGUGaGCGUaGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 41408 | 0.69 | 0.637587 |
Target: 5'- aUCGucGGCGCCggCAcCUCGUAUgCGCCGa -3' miRNA: 3'- -GGCu-CUGUGGaaGU-GAGCGUA-GCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 51892 | 0.69 | 0.6592 |
Target: 5'- gCCGAGcCGCCgaacggCACcgacCGCuUCGCCGg -3' miRNA: 3'- -GGCUCuGUGGaa----GUGa---GCGuAGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 41288 | 0.67 | 0.791637 |
Target: 5'- gCGGGACuGCCgcuucgcgaucCGCUCGCG-CGCCa -3' miRNA: 3'- gGCUCUG-UGGaa---------GUGAGCGUaGCGGc -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 27481 | 0.67 | 0.784871 |
Target: 5'- gCGAGcGCACCggccccccaccgaagUCGaccgaggugUUCGCGUCGCCGc -3' miRNA: 3'- gGCUC-UGUGGa--------------AGU---------GAGCGUAGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 4869 | 0.67 | 0.783898 |
Target: 5'- aCCGAGaagcgcGCGCCaUCGgUCGgGcCGCCGg -3' miRNA: 3'- -GGCUC------UGUGGaAGUgAGCgUaGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 59223 | 0.67 | 0.764135 |
Target: 5'- cCCGAGcaGCGCCgcCGCUgGCGcgagaugCGCCGc -3' miRNA: 3'- -GGCUC--UGUGGaaGUGAgCGUa------GCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 16877 | 0.67 | 0.764135 |
Target: 5'- uCCaGGcuuGCGCCUUCGC-CGgAUCGCCc -3' miRNA: 3'- -GGcUC---UGUGGAAGUGaGCgUAGCGGc -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 58704 | 0.67 | 0.793557 |
Target: 5'- aCCGGGcgcGCACCgccgagcCGgUCGCAcgCGCCGc -3' miRNA: 3'- -GGCUC---UGUGGaa-----GUgAGCGUa-GCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 17021 | 0.66 | 0.803052 |
Target: 5'- gCCGuuGAUACCg-----CGCGUCGCCGc -3' miRNA: 3'- -GGCu-CUGUGGaagugaGCGUAGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 34286 | 0.66 | 0.812375 |
Target: 5'- uUGAcGGCACCgacgCcCUCGCGgaUCGCCa -3' miRNA: 3'- gGCU-CUGUGGaa--GuGAGCGU--AGCGGc -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 30959 | 0.66 | 0.812375 |
Target: 5'- gCCGAa--ACCUugUCGC-CGaCGUCGCCGg -3' miRNA: 3'- -GGCUcugUGGA--AGUGaGC-GUAGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 58628 | 0.66 | 0.812375 |
Target: 5'- cCCGcGACGCCggccgUCACcgaUCaGCG-CGCCGa -3' miRNA: 3'- -GGCuCUGUGGa----AGUG---AG-CGUaGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 28843 | 0.66 | 0.821515 |
Target: 5'- gCCGAG-CGCCgcgUCgaACUUGC--CGCCGa -3' miRNA: 3'- -GGCUCuGUGGa--AG--UGAGCGuaGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 14398 | 0.66 | 0.826013 |
Target: 5'- gCCGAacagaccaguugcGACGCCcgcggugaugaaCGCgCGCGUCGCCGa -3' miRNA: 3'- -GGCU-------------CUGUGGaa----------GUGaGCGUAGCGGC- -5' |
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23904 | 3' | -54.4 | NC_005262.1 | + | 44479 | 1.11 | 0.001279 |
Target: 5'- uCCGAGACACCUUCACUCGCAUCGCCGa -3' miRNA: 3'- -GGCUCUGUGGAAGUGAGCGUAGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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