Results 21 - 40 of 54 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23904 | 3' | -54.4 | NC_005262.1 | + | 20404 | 0.74 | 0.376546 |
Target: 5'- uUGAGcucgcCGCCgaUGCUCGCAUCGCCGa -3' miRNA: 3'- gGCUCu----GUGGaaGUGAGCGUAGCGGC- -5' |
|||||||
23904 | 3' | -54.4 | NC_005262.1 | + | 41288 | 0.67 | 0.791637 |
Target: 5'- gCGGGACuGCCgcuucgcgaucCGCUCGCG-CGCCa -3' miRNA: 3'- gGCUCUG-UGGaa---------GUGAGCGUaGCGGc -5' |
|||||||
23904 | 3' | -54.4 | NC_005262.1 | + | 12768 | 0.7 | 0.615955 |
Target: 5'- cCCGucguucGACACgaUCACggCGCGgUCGCCGg -3' miRNA: 3'- -GGCu-----CUGUGgaAGUGa-GCGU-AGCGGC- -5' |
|||||||
23904 | 3' | -54.4 | NC_005262.1 | + | 2921 | 0.7 | 0.594377 |
Target: 5'- gCCGAcuucaucGCGCUUUCGCcgCGCAUUGCCu -3' miRNA: 3'- -GGCUc------UGUGGAAGUGa-GCGUAGCGGc -5' |
|||||||
23904 | 3' | -54.4 | NC_005262.1 | + | 4425 | 0.75 | 0.351168 |
Target: 5'- gCGAG-CGCCUggaGCUCgGCGUUGCCGg -3' miRNA: 3'- gGCUCuGUGGAag-UGAG-CGUAGCGGC- -5' |
|||||||
23904 | 3' | -54.4 | NC_005262.1 | + | 24158 | 0.68 | 0.712627 |
Target: 5'- cUCGAG-UGCCUUCACgcgCGCGagggCGUCGg -3' miRNA: 3'- -GGCUCuGUGGAAGUGa--GCGUa---GCGGC- -5' |
|||||||
23904 | 3' | -54.4 | NC_005262.1 | + | 53517 | 0.7 | 0.594377 |
Target: 5'- aCGAGACGCggugccaUUCAgUCGCcuccuugauGUCGCCGc -3' miRNA: 3'- gGCUCUGUGg------AAGUgAGCG---------UAGCGGC- -5' |
|||||||
23904 | 3' | -54.4 | NC_005262.1 | + | 11484 | 0.66 | 0.839208 |
Target: 5'- gCGAG-CACauggGC-CGCGUCGCCGa -3' miRNA: 3'- gGCUCuGUGgaagUGaGCGUAGCGGC- -5' |
|||||||
23904 | 3' | -54.4 | NC_005262.1 | + | 60495 | 0.72 | 0.479488 |
Target: 5'- gCGAGACGCCgggccgCGCggCGCAggcCGCCa -3' miRNA: 3'- gGCUCUGUGGaa----GUGa-GCGUa--GCGGc -5' |
|||||||
23904 | 3' | -54.4 | NC_005262.1 | + | 57170 | 0.68 | 0.691411 |
Target: 5'- cCCGGcGACcCCUcgcCGCUCGUGUCGCUc -3' miRNA: 3'- -GGCU-CUGuGGAa--GUGAGCGUAGCGGc -5' |
|||||||
23904 | 3' | -54.4 | NC_005262.1 | + | 43870 | 0.68 | 0.691411 |
Target: 5'- aCCucGGCGCgaUCGCgCGCAUgGCCGa -3' miRNA: 3'- -GGcuCUGUGgaAGUGaGCGUAgCGGC- -5' |
|||||||
23904 | 3' | -54.4 | NC_005262.1 | + | 57501 | 0.71 | 0.54111 |
Target: 5'- aCGAGGCGCCgaagUUCAg-CGUcgCGCCGg -3' miRNA: 3'- gGCUCUGUGG----AAGUgaGCGuaGCGGC- -5' |
|||||||
23904 | 3' | -54.4 | NC_005262.1 | + | 33649 | 0.66 | 0.803052 |
Target: 5'- uCCGAGGCugaCgagcgCGcCUCGCugGUCGCCGc -3' miRNA: 3'- -GGCUCUGug-Gaa---GU-GAGCG--UAGCGGC- -5' |
|||||||
23904 | 3' | -54.4 | NC_005262.1 | + | 49771 | 0.7 | 0.594377 |
Target: 5'- cCCGAGGCuCCggcCGCU-GCcgCGCCGg -3' miRNA: 3'- -GGCUCUGuGGaa-GUGAgCGuaGCGGC- -5' |
|||||||
23904 | 3' | -54.4 | NC_005262.1 | + | 7024 | 0.66 | 0.830462 |
Target: 5'- uUCGguGGACGucagguCCUUCGCgCGCAUCGCg- -3' miRNA: 3'- -GGC--UCUGU------GGAAGUGaGCGUAGCGgc -5' |
|||||||
23904 | 3' | -54.4 | NC_005262.1 | + | 33595 | 0.66 | 0.838343 |
Target: 5'- aUCGAGGcCACCgcagUCGCcccgacgUCGCAggaaaagcCGCCGg -3' miRNA: 3'- -GGCUCU-GUGGa---AGUG-------AGCGUa-------GCGGC- -5' |
|||||||
23904 | 3' | -54.4 | NC_005262.1 | + | 28814 | 0.66 | 0.839208 |
Target: 5'- cCCGc-GCAUCUcgaGCUCGCGUCGCg- -3' miRNA: 3'- -GGCucUGUGGAag-UGAGCGUAGCGgc -5' |
|||||||
23904 | 3' | -54.4 | NC_005262.1 | + | 45551 | 0.66 | 0.839208 |
Target: 5'- uCCGGcGGCAaggaUUCGCUCGCGcUGCUGu -3' miRNA: 3'- -GGCU-CUGUgg--AAGUGAGCGUaGCGGC- -5' |
|||||||
23904 | 3' | -54.4 | NC_005262.1 | + | 51892 | 0.69 | 0.6592 |
Target: 5'- gCCGAGcCGCCgaacggCACcgacCGCuUCGCCGg -3' miRNA: 3'- -GGCUCuGUGGaa----GUGa---GCGuAGCGGC- -5' |
|||||||
23904 | 3' | -54.4 | NC_005262.1 | + | 49978 | 0.69 | 0.680715 |
Target: 5'- aCGAGACAgCggCGCcCGCuccCGCCGa -3' miRNA: 3'- gGCUCUGUgGaaGUGaGCGua-GCGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home