miRNA display CGI


Results 41 - 54 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23904 3' -54.4 NC_005262.1 + 43870 0.68 0.691411
Target:  5'- aCCucGGCGCgaUCGCgCGCAUgGCCGa -3'
miRNA:   3'- -GGcuCUGUGgaAGUGaGCGUAgCGGC- -5'
23904 3' -54.4 NC_005262.1 + 11484 0.66 0.839208
Target:  5'- gCGAG-CACauggGC-CGCGUCGCCGa -3'
miRNA:   3'- gGCUCuGUGgaagUGaGCGUAGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 28814 0.66 0.839208
Target:  5'- cCCGc-GCAUCUcgaGCUCGCGUCGCg- -3'
miRNA:   3'- -GGCucUGUGGAag-UGAGCGUAGCGgc -5'
23904 3' -54.4 NC_005262.1 + 33595 0.66 0.838343
Target:  5'- aUCGAGGcCACCgcagUCGCcccgacgUCGCAggaaaagcCGCCGg -3'
miRNA:   3'- -GGCUCU-GUGGa---AGUG-------AGCGUa-------GCGGC- -5'
23904 3' -54.4 NC_005262.1 + 7024 0.66 0.830462
Target:  5'- uUCGguGGACGucagguCCUUCGCgCGCAUCGCg- -3'
miRNA:   3'- -GGC--UCUGU------GGAAGUGaGCGUAGCGgc -5'
23904 3' -54.4 NC_005262.1 + 59623 0.67 0.780971
Target:  5'- gCGAGAagaACCUcgcgcgccagucucUC-CUCGCGcuggUCGCCGa -3'
miRNA:   3'- gGCUCUg--UGGA--------------AGuGAGCGU----AGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 40898 0.67 0.764135
Target:  5'- aCGAGAaccgacCACCg-UACUCGCccUCGCCGu -3'
miRNA:   3'- gGCUCU------GUGGaaGUGAGCGu-AGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 33649 0.66 0.803052
Target:  5'- uCCGAGGCugaCgagcgCGcCUCGCugGUCGCCGc -3'
miRNA:   3'- -GGCUCUGug-Gaa---GU-GAGCG--UAGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 22199 0.67 0.764135
Target:  5'- gCCGAGaACGCCgggcucgCGCUCgacaagcucacgGCcgCGCCGc -3'
miRNA:   3'- -GGCUC-UGUGGaa-----GUGAG------------CGuaGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 3413 0.67 0.764135
Target:  5'- aUCGAGACGgCga-GC-CGCAUCGCUu -3'
miRNA:   3'- -GGCUCUGUgGaagUGaGCGUAGCGGc -5'
23904 3' -54.4 NC_005262.1 + 48302 0.68 0.712627
Target:  5'- cUCGAGGCcgGCCUgCGCUa-CAUCGCCu -3'
miRNA:   3'- -GGCUCUG--UGGAaGUGAgcGUAGCGGc -5'
23904 3' -54.4 NC_005262.1 + 52326 0.68 0.702052
Target:  5'- uCCGgaacaAGGCGCCgg-ACgCGUAUCGCCGg -3'
miRNA:   3'- -GGC-----UCUGUGGaagUGaGCGUAGCGGC- -5'
23904 3' -54.4 NC_005262.1 + 57170 0.68 0.691411
Target:  5'- cCCGGcGACcCCUcgcCGCUCGUGUCGCUc -3'
miRNA:   3'- -GGCU-CUGuGGAa--GUGAGCGUAGCGGc -5'
23904 3' -54.4 NC_005262.1 + 36947 0.74 0.376546
Target:  5'- gCCGAGAuCACCa-CGCUCGCGcCGCUGc -3'
miRNA:   3'- -GGCUCU-GUGGaaGUGAGCGUaGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.