miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23904 5' -52 NC_005262.1 + 11967 0.66 0.913485
Target:  5'- cGaCGGCGAUGcguGAUCGUCAGcacGACCa- -3'
miRNA:   3'- aC-GCUGCUAUu--CUGGCAGUC---UUGGga -5'
23904 5' -52 NC_005262.1 + 43356 0.66 0.900121
Target:  5'- gGCGACGGUGccGGaACCGUgCAGGauaguggggccGCUCUg -3'
miRNA:   3'- aCGCUGCUAU--UC-UGGCA-GUCU-----------UGGGA- -5'
23904 5' -52 NC_005262.1 + 62704 0.66 0.893025
Target:  5'- cGCGACGAUGGGuaAUCGcgCAcGcACCCUg -3'
miRNA:   3'- aCGCUGCUAUUC--UGGCa-GU-CuUGGGA- -5'
23904 5' -52 NC_005262.1 + 14301 0.66 0.893025
Target:  5'- uUGCGugGAcggGAGGgCGgCGGAACCg- -3'
miRNA:   3'- -ACGCugCUa--UUCUgGCaGUCUUGGga -5'
23904 5' -52 NC_005262.1 + 8307 0.66 0.88566
Target:  5'- cGuCGACGAacAGACgGUCGacGCCCa -3'
miRNA:   3'- aC-GCUGCUauUCUGgCAGUcuUGGGa -5'
23904 5' -52 NC_005262.1 + 63611 0.67 0.870141
Target:  5'- gGCGugGAccaUGAaGCCGUCcGAGCCg- -3'
miRNA:   3'- aCGCugCU---AUUcUGGCAGuCUUGGga -5'
23904 5' -52 NC_005262.1 + 4809 0.67 0.870141
Target:  5'- cGCGACGGcgcgggaggcgUGAGGCCGcCGGcGGCCg- -3'
miRNA:   3'- aCGCUGCU-----------AUUCUGGCaGUC-UUGGga -5'
23904 5' -52 NC_005262.1 + 32033 0.67 0.861999
Target:  5'- cGCGAUGAUGcAGGCCGaa--AACCCg -3'
miRNA:   3'- aCGCUGCUAU-UCUGGCagucUUGGGa -5'
23904 5' -52 NC_005262.1 + 10870 0.67 0.861171
Target:  5'- gGCGGCGc--AGGCCGUCguAGAucgagcggaucacGCCCUc -3'
miRNA:   3'- aCGCUGCuauUCUGGCAG--UCU-------------UGGGA- -5'
23904 5' -52 NC_005262.1 + 46797 0.67 0.853613
Target:  5'- gGCGGCGAgccgauGACCGacgugCAG-GCCCg -3'
miRNA:   3'- aCGCUGCUauu---CUGGCa----GUCuUGGGa -5'
23904 5' -52 NC_005262.1 + 23535 0.67 0.844989
Target:  5'- aGCG-CGggAGGACCGcgCAGAcugaccaaccGCCCg -3'
miRNA:   3'- aCGCuGCuaUUCUGGCa-GUCU----------UGGGa -5'
23904 5' -52 NC_005262.1 + 23224 0.68 0.827066
Target:  5'- cGCGACGGUcgcGGcACCGcCGGuguuGCCCg -3'
miRNA:   3'- aCGCUGCUAu--UC-UGGCaGUCu---UGGGa -5'
23904 5' -52 NC_005262.1 + 37202 0.68 0.817785
Target:  5'- uUGCGGacguUGAUGAGGCCGcCAGcguAugCCUg -3'
miRNA:   3'- -ACGCU----GCUAUUCUGGCaGUC---UugGGA- -5'
23904 5' -52 NC_005262.1 + 50405 0.69 0.788789
Target:  5'- cGCGGCGAUcAGcGCCG-CGGAGCgCg -3'
miRNA:   3'- aCGCUGCUAuUC-UGGCaGUCUUGgGa -5'
23904 5' -52 NC_005262.1 + 22134 0.69 0.788789
Target:  5'- gGCGGCGAUGAcggcGCCGcCGGAAacaaCCUg -3'
miRNA:   3'- aCGCUGCUAUUc---UGGCaGUCUUg---GGA- -5'
23904 5' -52 NC_005262.1 + 56300 0.69 0.787796
Target:  5'- aUGCGucGCGAUccaguucAGGACCG-CGGAuaGCCCg -3'
miRNA:   3'- -ACGC--UGCUA-------UUCUGGCaGUCU--UGGGa -5'
23904 5' -52 NC_005262.1 + 21192 0.69 0.768608
Target:  5'- aGCGA-GAUAAGGCCGgUCAGGucgUCCg -3'
miRNA:   3'- aCGCUgCUAUUCUGGC-AGUCUu--GGGa -5'
23904 5' -52 NC_005262.1 + 43850 0.72 0.616505
Target:  5'- cGCGGCGGUGc-GCCGgCAGGACCUc -3'
miRNA:   3'- aCGCUGCUAUucUGGCaGUCUUGGGa -5'
23904 5' -52 NC_005262.1 + 5508 0.72 0.605398
Target:  5'- cGCGACGAccggaccGGGAUCGUCGucGCCCa -3'
miRNA:   3'- aCGCUGCUa------UUCUGGCAGUcuUGGGa -5'
23904 5' -52 NC_005262.1 + 59929 0.72 0.594315
Target:  5'- cGCGACGA-GGGACUGUCGGccuACCa- -3'
miRNA:   3'- aCGCUGCUaUUCUGGCAGUCu--UGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.