miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23906 3' -54.8 NC_005262.1 + 25374 0.66 0.798443
Target:  5'- gGUGCGGCaucaucgcgcaGGaUCgGGAGACggCCgagGCg -3'
miRNA:   3'- -CACGCCG-----------CC-AG-CCUCUGaaGGaaaCG- -5'
23906 3' -54.8 NC_005262.1 + 13551 0.66 0.778922
Target:  5'- uUGCGGCGGUCGaucucGGCcgacaCCUUgcgGCg -3'
miRNA:   3'- cACGCCGCCAGCcu---CUGaa---GGAAa--CG- -5'
23906 3' -54.8 NC_005262.1 + 62553 0.66 0.768932
Target:  5'- uUGUGGggaucacguccUGGUCGGAGGCggcgagCUUUGCc -3'
miRNA:   3'- cACGCC-----------GCCAGCCUCUGaag---GAAACG- -5'
23906 3' -54.8 NC_005262.1 + 57475 0.66 0.768932
Target:  5'- -aGCGGCGGgcgccgaCGaGAGGCggCCg--GCg -3'
miRNA:   3'- caCGCCGCCa------GC-CUCUGaaGGaaaCG- -5'
23906 3' -54.8 NC_005262.1 + 42921 0.66 0.758802
Target:  5'- cGUGCGGCGGcuggguaaCGGAguuGACUgCCUgcgucgUGUa -3'
miRNA:   3'- -CACGCCGCCa-------GCCU---CUGAaGGAa-----ACG- -5'
23906 3' -54.8 NC_005262.1 + 7536 0.67 0.72769
Target:  5'- -gGCGGCGcGUCGGcgcgcucGACgacaUCCUUcccgUGCa -3'
miRNA:   3'- caCGCCGC-CAGCCu------CUGa---AGGAA----ACG- -5'
23906 3' -54.8 NC_005262.1 + 28618 0.67 0.69573
Target:  5'- -cGCGGCGGUCGu-GACcUCa-UUGCc -3'
miRNA:   3'- caCGCCGCCAGCcuCUGaAGgaAACG- -5'
23906 3' -54.8 NC_005262.1 + 37025 0.68 0.652316
Target:  5'- -gGCGGCGGUUcauGGCUgUUCUUUGCc -3'
miRNA:   3'- caCGCCGCCAGccuCUGA-AGGAAACG- -5'
23906 3' -54.8 NC_005262.1 + 5311 0.69 0.619525
Target:  5'- ---aGGCGGUCGGAG-CUggCCg--GCa -3'
miRNA:   3'- cacgCCGCCAGCCUCuGAa-GGaaaCG- -5'
23906 3' -54.8 NC_005262.1 + 7015 0.73 0.368483
Target:  5'- -cGCGGCGGcuUCGGuGGACgucaggUCCUUcGCg -3'
miRNA:   3'- caCGCCGCC--AGCC-UCUGa-----AGGAAaCG- -5'
23906 3' -54.8 NC_005262.1 + 43947 1.12 0.000818
Target:  5'- uGUGCGGCGGUCGGAGACUUCCUUUGCg -3'
miRNA:   3'- -CACGCCGCCAGCCUCUGAAGGAAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.