miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23906 5' -52 NC_005262.1 + 21405 0.66 0.915038
Target:  5'- cCGGAGAGGGuGAcGGuCUgucCGGCCuGCCa -3'
miRNA:   3'- -GCCUUUUCC-CU-UCuGAac-GCUGG-CGG- -5'
23906 5' -52 NC_005262.1 + 43853 0.66 0.894905
Target:  5'- uCGGGAcguGGGAuGACUacUGCGuggcaaagaGCCGCg -3'
miRNA:   3'- -GCCUUuu-CCCUuCUGA--ACGC---------UGGCGg -5'
23906 5' -52 NC_005262.1 + 26887 0.67 0.880137
Target:  5'- aCGGAcGAcGGGAAGuagaGCUUgaGCGuCCGCUu -3'
miRNA:   3'- -GCCUuUU-CCCUUC----UGAA--CGCuGGCGG- -5'
23906 5' -52 NC_005262.1 + 54398 0.67 0.880137
Target:  5'- cCGGGGccauacucguuGAGGGGAGGCUgucGCcaACCuGCCg -3'
miRNA:   3'- -GCCUU-----------UUCCCUUCUGAa--CGc-UGG-CGG- -5'
23906 5' -52 NC_005262.1 + 17306 0.67 0.880137
Target:  5'- aGGAGAA-GGAGGAa--GCaGACCGCa -3'
miRNA:   3'- gCCUUUUcCCUUCUgaaCG-CUGGCGg -5'
23906 5' -52 NC_005262.1 + 32041 0.67 0.867578
Target:  5'- gCGGAuguuGuGGAccgugcgcuugcgcGACaUGCGACCGCCg -3'
miRNA:   3'- -GCCUuuu-C-CCUu-------------CUGaACGCUGGCGG- -5'
23906 5' -52 NC_005262.1 + 51188 0.68 0.829877
Target:  5'- gCGGc-GAGGGAGGGCgcgcucauccGCGACgccuCGCCg -3'
miRNA:   3'- -GCCuuUUCCCUUCUGaa--------CGCUG----GCGG- -5'
23906 5' -52 NC_005262.1 + 30086 0.68 0.820713
Target:  5'- cCGGcaAGAAGGGcgacGACacGcCGGCCGCCg -3'
miRNA:   3'- -GCC--UUUUCCCuu--CUGaaC-GCUGGCGG- -5'
23906 5' -52 NC_005262.1 + 9048 0.69 0.772103
Target:  5'- gCGGAGAAcGGGAGGAggaaucCUccaCGACCGCa -3'
miRNA:   3'- -GCCUUUU-CCCUUCU------GAac-GCUGGCGg -5'
23906 5' -52 NC_005262.1 + 35833 0.69 0.761898
Target:  5'- cCGGAGcGGcGucGGCgccGCGACCGCCc -3'
miRNA:   3'- -GCCUUuUCcCuuCUGaa-CGCUGGCGG- -5'
23906 5' -52 NC_005262.1 + 23531 0.69 0.761898
Target:  5'- aGGAAGcgcGGGAGGACc-GCGcagacugaccaACCGCCc -3'
miRNA:   3'- gCCUUUu--CCCUUCUGaaCGC-----------UGGCGG- -5'
23906 5' -52 NC_005262.1 + 50987 0.7 0.694993
Target:  5'- cCGGAGAAGgucgagcaggccaaGGAAgcGACcgGCGACCGCg -3'
miRNA:   3'- -GCCUUUUC--------------CCUU--CUGaaCGCUGGCGg -5'
23906 5' -52 NC_005262.1 + 30734 0.71 0.654376
Target:  5'- aGGAGAAGcugauGAAGAUgu-CGGCCGCCg -3'
miRNA:   3'- gCCUUUUCc----CUUCUGaacGCUGGCGG- -5'
23906 5' -52 NC_005262.1 + 35912 0.72 0.632267
Target:  5'- -uGAGGAGGGcGGuCUUGgcuCGGCCGCCu -3'
miRNA:   3'- gcCUUUUCCCuUCuGAAC---GCUGGCGG- -5'
23906 5' -52 NC_005262.1 + 10629 0.72 0.632267
Target:  5'- aCGGAcgcGAAGGGcGGG-UUGcCGAUCGCCg -3'
miRNA:   3'- -GCCU---UUUCCCuUCUgAAC-GCUGGCGG- -5'
23906 5' -52 NC_005262.1 + 14306 0.72 0.610158
Target:  5'- uGGAc--GGGAGGGCg-GCGgaACCGCCg -3'
miRNA:   3'- gCCUuuuCCCUUCUGaaCGC--UGGCGG- -5'
23906 5' -52 NC_005262.1 + 32198 0.73 0.533839
Target:  5'- aCGGAGAGGucGAAGGugaUGCGAUCGCCg -3'
miRNA:   3'- -GCCUUUUCc-CUUCUga-ACGCUGGCGG- -5'
23906 5' -52 NC_005262.1 + 43984 1.12 0.001922
Target:  5'- uCGGAAAAGGGAAGACUUGCGACCGCCc -3'
miRNA:   3'- -GCCUUUUCCCUUCUGAACGCUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.