miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23907 3' -54.9 NC_005262.1 + 4836 0.66 0.773858
Target:  5'- cCGGCGGCCGGC----UGGUUcgacugcugCGCGc -3'
miRNA:   3'- -GUCGCCGGCCGuucuACCAAa--------GUGCa -5'
23907 3' -54.9 NC_005262.1 + 2419 0.66 0.76373
Target:  5'- gUAGCGGCUGcGCAGc--GGcUUCACGUc -3'
miRNA:   3'- -GUCGCCGGC-CGUUcuaCCaAAGUGCA- -5'
23907 3' -54.9 NC_005262.1 + 25368 0.66 0.742034
Target:  5'- cCGGCGugaucucgaccgcGCCGGCcuGGAUGGUgUCGCc- -3'
miRNA:   3'- -GUCGC-------------CGGCCGu-UCUACCAaAGUGca -5'
23907 3' -54.9 NC_005262.1 + 48369 0.67 0.711291
Target:  5'- uGGCGGCCGGCuaucAGucgGGU--UACGa -3'
miRNA:   3'- gUCGCCGGCCGu---UCua-CCAaaGUGCa -5'
23907 3' -54.9 NC_005262.1 + 12280 0.67 0.68969
Target:  5'- -cGCGGCCGGCGAGccGaGcUUUCuCGg -3'
miRNA:   3'- guCGCCGGCCGUUCuaC-C-AAAGuGCa -5'
23907 3' -54.9 NC_005262.1 + 15768 0.68 0.645912
Target:  5'- -cGCGGCCGGCugcugcguGGucugGGUguuggUCGCGg -3'
miRNA:   3'- guCGCCGGCCGu-------UCua--CCAa----AGUGCa -5'
23907 3' -54.9 NC_005262.1 + 17259 0.68 0.645912
Target:  5'- gCGGCGGCCGGCGccgcGcUGGgcugcugCGCGg -3'
miRNA:   3'- -GUCGCCGGCCGUu---CuACCaaa----GUGCa -5'
23907 3' -54.9 NC_005262.1 + 38520 0.68 0.623905
Target:  5'- gGGCacGGCCGGCAAGAgcuacacGG--UCGCGg -3'
miRNA:   3'- gUCG--CCGGCCGUUCUa------CCaaAGUGCa -5'
23907 3' -54.9 NC_005262.1 + 50203 0.68 0.623905
Target:  5'- aCGGCGGCUGGacgAAGAUGc--UCACGa -3'
miRNA:   3'- -GUCGCCGGCCg--UUCUACcaaAGUGCa -5'
23907 3' -54.9 NC_005262.1 + 11023 0.68 0.612907
Target:  5'- gUAGCGGUCGGgGaAGAUGccgUUCGCGa -3'
miRNA:   3'- -GUCGCCGGCCgU-UCUACca-AAGUGCa -5'
23907 3' -54.9 NC_005262.1 + 5320 0.68 0.612907
Target:  5'- gAGCuGGCCGGCAGGAgc--UUCGCa- -3'
miRNA:   3'- gUCG-CCGGCCGUUCUaccaAAGUGca -5'
23907 3' -54.9 NC_005262.1 + 49652 0.68 0.612907
Target:  5'- uCGGCGGCCuGCAAGgcGGcggCAUGg -3'
miRNA:   3'- -GUCGCCGGcCGUUCuaCCaaaGUGCa -5'
23907 3' -54.9 NC_005262.1 + 61162 0.69 0.601927
Target:  5'- gCGGCGGCgGGCGAGcugacGGgcgCGCGg -3'
miRNA:   3'- -GUCGCCGgCCGUUCua---CCaaaGUGCa -5'
23907 3' -54.9 NC_005262.1 + 10459 0.69 0.569175
Target:  5'- -cGCGGUCGGCGAGGUagcGGcgcgCGCGg -3'
miRNA:   3'- guCGCCGGCCGUUCUA---CCaaa-GUGCa -5'
23907 3' -54.9 NC_005262.1 + 18103 0.7 0.526255
Target:  5'- aAGCGGCCGGCGucgacaauugGGAgGGUaUCgACGa -3'
miRNA:   3'- gUCGCCGGCCGU----------UCUaCCAaAG-UGCa -5'
23907 3' -54.9 NC_005262.1 + 8647 0.7 0.494879
Target:  5'- -cGCGGCCGGguAGAgcucgaGGaaUUCGCGUg -3'
miRNA:   3'- guCGCCGGCCguUCUa-----CCa-AAGUGCA- -5'
23907 3' -54.9 NC_005262.1 + 47403 0.72 0.425307
Target:  5'- cCGGCGGCCGGCcGGGgcgGGUUcaaaaCugGUu -3'
miRNA:   3'- -GUCGCCGGCCGuUCUa--CCAAa----GugCA- -5'
23907 3' -54.9 NC_005262.1 + 908 0.72 0.425307
Target:  5'- uCGGCGcGCUGGCGgguGAUGGUgucgcccaucUUCACGg -3'
miRNA:   3'- -GUCGC-CGGCCGUu--CUACCA----------AAGUGCa -5'
23907 3' -54.9 NC_005262.1 + 43159 1.08 0.001526
Target:  5'- gCAGCGGCCGGCAAGAUGGUUUCACGUg -3'
miRNA:   3'- -GUCGCCGGCCGUUCUACCAAAGUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.