Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23907 | 3' | -54.9 | NC_005262.1 | + | 43159 | 1.08 | 0.001526 |
Target: 5'- gCAGCGGCCGGCAAGAUGGUUUCACGUg -3' miRNA: 3'- -GUCGCCGGCCGUUCUACCAAAGUGCA- -5' |
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23907 | 3' | -54.9 | NC_005262.1 | + | 908 | 0.72 | 0.425307 |
Target: 5'- uCGGCGcGCUGGCGgguGAUGGUgucgcccaucUUCACGg -3' miRNA: 3'- -GUCGC-CGGCCGUu--CUACCA----------AAGUGCa -5' |
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23907 | 3' | -54.9 | NC_005262.1 | + | 47403 | 0.72 | 0.425307 |
Target: 5'- cCGGCGGCCGGCcGGGgcgGGUUcaaaaCugGUu -3' miRNA: 3'- -GUCGCCGGCCGuUCUa--CCAAa----GugCA- -5' |
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23907 | 3' | -54.9 | NC_005262.1 | + | 8647 | 0.7 | 0.494879 |
Target: 5'- -cGCGGCCGGguAGAgcucgaGGaaUUCGCGUg -3' miRNA: 3'- guCGCCGGCCguUCUa-----CCa-AAGUGCA- -5' |
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23907 | 3' | -54.9 | NC_005262.1 | + | 10459 | 0.69 | 0.569175 |
Target: 5'- -cGCGGUCGGCGAGGUagcGGcgcgCGCGg -3' miRNA: 3'- guCGCCGGCCGUUCUA---CCaaa-GUGCa -5' |
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23907 | 3' | -54.9 | NC_005262.1 | + | 11023 | 0.68 | 0.612907 |
Target: 5'- gUAGCGGUCGGgGaAGAUGccgUUCGCGa -3' miRNA: 3'- -GUCGCCGGCCgU-UCUACca-AAGUGCa -5' |
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23907 | 3' | -54.9 | NC_005262.1 | + | 15768 | 0.68 | 0.645912 |
Target: 5'- -cGCGGCCGGCugcugcguGGucugGGUguuggUCGCGg -3' miRNA: 3'- guCGCCGGCCGu-------UCua--CCAa----AGUGCa -5' |
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23907 | 3' | -54.9 | NC_005262.1 | + | 17259 | 0.68 | 0.645912 |
Target: 5'- gCGGCGGCCGGCGccgcGcUGGgcugcugCGCGg -3' miRNA: 3'- -GUCGCCGGCCGUu---CuACCaaa----GUGCa -5' |
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23907 | 3' | -54.9 | NC_005262.1 | + | 25368 | 0.66 | 0.742034 |
Target: 5'- cCGGCGugaucucgaccgcGCCGGCcuGGAUGGUgUCGCc- -3' miRNA: 3'- -GUCGC-------------CGGCCGu-UCUACCAaAGUGca -5' |
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23907 | 3' | -54.9 | NC_005262.1 | + | 2419 | 0.66 | 0.76373 |
Target: 5'- gUAGCGGCUGcGCAGc--GGcUUCACGUc -3' miRNA: 3'- -GUCGCCGGC-CGUUcuaCCaAAGUGCA- -5' |
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23907 | 3' | -54.9 | NC_005262.1 | + | 4836 | 0.66 | 0.773858 |
Target: 5'- cCGGCGGCCGGC----UGGUUcgacugcugCGCGc -3' miRNA: 3'- -GUCGCCGGCCGuucuACCAAa--------GUGCa -5' |
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23907 | 3' | -54.9 | NC_005262.1 | + | 48369 | 0.67 | 0.711291 |
Target: 5'- uGGCGGCCGGCuaucAGucgGGU--UACGa -3' miRNA: 3'- gUCGCCGGCCGu---UCua-CCAaaGUGCa -5' |
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23907 | 3' | -54.9 | NC_005262.1 | + | 12280 | 0.67 | 0.68969 |
Target: 5'- -cGCGGCCGGCGAGccGaGcUUUCuCGg -3' miRNA: 3'- guCGCCGGCCGUUCuaC-C-AAAGuGCa -5' |
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23907 | 3' | -54.9 | NC_005262.1 | + | 50203 | 0.68 | 0.623905 |
Target: 5'- aCGGCGGCUGGacgAAGAUGc--UCACGa -3' miRNA: 3'- -GUCGCCGGCCg--UUCUACcaaAGUGCa -5' |
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23907 | 3' | -54.9 | NC_005262.1 | + | 38520 | 0.68 | 0.623905 |
Target: 5'- gGGCacGGCCGGCAAGAgcuacacGG--UCGCGg -3' miRNA: 3'- gUCG--CCGGCCGUUCUa------CCaaAGUGCa -5' |
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23907 | 3' | -54.9 | NC_005262.1 | + | 49652 | 0.68 | 0.612907 |
Target: 5'- uCGGCGGCCuGCAAGgcGGcggCAUGg -3' miRNA: 3'- -GUCGCCGGcCGUUCuaCCaaaGUGCa -5' |
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23907 | 3' | -54.9 | NC_005262.1 | + | 5320 | 0.68 | 0.612907 |
Target: 5'- gAGCuGGCCGGCAGGAgc--UUCGCa- -3' miRNA: 3'- gUCG-CCGGCCGUUCUaccaAAGUGca -5' |
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23907 | 3' | -54.9 | NC_005262.1 | + | 61162 | 0.69 | 0.601927 |
Target: 5'- gCGGCGGCgGGCGAGcugacGGgcgCGCGg -3' miRNA: 3'- -GUCGCCGgCCGUUCua---CCaaaGUGCa -5' |
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23907 | 3' | -54.9 | NC_005262.1 | + | 18103 | 0.7 | 0.526255 |
Target: 5'- aAGCGGCCGGCGucgacaauugGGAgGGUaUCgACGa -3' miRNA: 3'- gUCGCCGGCCGU----------UCUaCCAaAG-UGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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