miRNA display CGI


Results 1 - 20 of 172 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23907 5' -60.7 NC_005262.1 + 29701 0.66 0.485939
Target:  5'- cCUGCGCAACcGCCCgcaccggGCcaagcagcauccgaaGCGCaGCCGg -3'
miRNA:   3'- -GAUGCGUUGuCGGGa------CGc--------------CGCG-CGGC- -5'
23907 5' -60.7 NC_005262.1 + 1054 0.66 0.484958
Target:  5'- -aAUGCuGCGGCgCUGaccgccaGCGCGCCGa -3'
miRNA:   3'- gaUGCGuUGUCGgGACgc-----CGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 54619 0.66 0.484958
Target:  5'- uCUGCGcCGACcGCCaUGCGuGaagGCGCCGg -3'
miRNA:   3'- -GAUGC-GUUGuCGGgACGC-Cg--CGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 6677 0.66 0.484958
Target:  5'- aCU-CGCcGgAGCCCUugaGCuGCGUGCCGu -3'
miRNA:   3'- -GAuGCGuUgUCGGGA---CGcCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 13533 0.66 0.484958
Target:  5'- -gGCGCgGGCGcGCCCucguUGCGGCG-GUCGa -3'
miRNA:   3'- gaUGCG-UUGU-CGGG----ACGCCGCgCGGC- -5'
23907 5' -60.7 NC_005262.1 + 25229 0.66 0.484958
Target:  5'- -cAUGCuucuuucaucCGGCCC-GCGGCGgUGCCGa -3'
miRNA:   3'- gaUGCGuu--------GUCGGGaCGCCGC-GCGGC- -5'
23907 5' -60.7 NC_005262.1 + 9943 0.66 0.484958
Target:  5'- -aGCGCAGC-GCgCUGaCGGCGaagaagauUGCCGa -3'
miRNA:   3'- gaUGCGUUGuCGgGAC-GCCGC--------GCGGC- -5'
23907 5' -60.7 NC_005262.1 + 39429 0.66 0.484958
Target:  5'- -gGCGuCGACAGggUUGCagguaucaGGCGCGCCGa -3'
miRNA:   3'- gaUGC-GUUGUCggGACG--------CCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 15292 0.66 0.483978
Target:  5'- -aGCGC-GCuGUuaCCUGCGGCugccgucGCGCCGc -3'
miRNA:   3'- gaUGCGuUGuCG--GGACGCCG-------CGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 19933 0.66 0.475199
Target:  5'- -cGCGCGAUcgcgccgaGGUCCUGcCGGCcacCGCCGn -3'
miRNA:   3'- gaUGCGUUG--------UCGGGAC-GCCGc--GCGGC- -5'
23907 5' -60.7 NC_005262.1 + 6049 0.66 0.475199
Target:  5'- -cGCGCAAUGcccucgagcGCCUugacgauacucaUGCGGCGCGCg- -3'
miRNA:   3'- gaUGCGUUGU---------CGGG------------ACGCCGCGCGgc -5'
23907 5' -60.7 NC_005262.1 + 58589 0.66 0.475199
Target:  5'- --gUGCAggAUAcGCCCU-CGGuCGCGCCGg -3'
miRNA:   3'- gauGCGU--UGU-CGGGAcGCC-GCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 22129 0.66 0.475199
Target:  5'- gUGC-CGGCGGCgaUGaCGGCGCcGCCGg -3'
miRNA:   3'- gAUGcGUUGUCGggAC-GCCGCG-CGGC- -5'
23907 5' -60.7 NC_005262.1 + 15713 0.66 0.475199
Target:  5'- -cGCGCGuCGGCgCCggGCGGCuCGUCGc -3'
miRNA:   3'- gaUGCGUuGUCG-GGa-CGCCGcGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 30052 0.66 0.475199
Target:  5'- uUACGCAGC-GCCUU-CGGCGagcuuCGCCu -3'
miRNA:   3'- gAUGCGUUGuCGGGAcGCCGC-----GCGGc -5'
23907 5' -60.7 NC_005262.1 + 13365 0.66 0.475199
Target:  5'- gCUGCGcCAGCAcggaauccuGCgCCUG-GGCGCGCg- -3'
miRNA:   3'- -GAUGC-GUUGU---------CG-GGACgCCGCGCGgc -5'
23907 5' -60.7 NC_005262.1 + 40725 0.66 0.475199
Target:  5'- -gGCGCuGAC-GCCCUcgagcacgggcgGCGGCGCGUUc -3'
miRNA:   3'- gaUGCG-UUGuCGGGA------------CGCCGCGCGGc -5'
23907 5' -60.7 NC_005262.1 + 54948 0.66 0.475199
Target:  5'- gCUGCGCuuCAa-CCUGCGcgaaaaccagaaGCGCGCCa -3'
miRNA:   3'- -GAUGCGuuGUcgGGACGC------------CGCGCGGc -5'
23907 5' -60.7 NC_005262.1 + 15496 0.66 0.475199
Target:  5'- -aGCGCGGCGGCUCgcucacCGGCGaGCUGc -3'
miRNA:   3'- gaUGCGUUGUCGGGac----GCCGCgCGGC- -5'
23907 5' -60.7 NC_005262.1 + 11770 0.66 0.475199
Target:  5'- -gGCGCGGCccgaCCUG-GGCGCGCUc -3'
miRNA:   3'- gaUGCGUUGucg-GGACgCCGCGCGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.