miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23907 5' -60.7 NC_005262.1 + 12548 0.66 0.446531
Target:  5'- uUGCgGCGGCAGgUCgcgGCGGCGCucGUCGa -3'
miRNA:   3'- gAUG-CGUUGUCgGGa--CGCCGCG--CGGC- -5'
23907 5' -60.7 NC_005262.1 + 45190 0.66 0.465539
Target:  5'- aUGgGUAACGGCCUgcccucgcagGCGGCaugucCGCCGg -3'
miRNA:   3'- gAUgCGUUGUCGGGa---------CGCCGc----GCGGC- -5'
23907 5' -60.7 NC_005262.1 + 58698 0.66 0.465539
Target:  5'- -cGCGCAACaAGCUg-GCGGCaugcccgagGCGCUGa -3'
miRNA:   3'- gaUGCGUUG-UCGGgaCGCCG---------CGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 10517 0.66 0.446531
Target:  5'- ---aGCAGCAGCgCgGgGGCG-GCCGa -3'
miRNA:   3'- gaugCGUUGUCGgGaCgCCGCgCGGC- -5'
23907 5' -60.7 NC_005262.1 + 12821 0.66 0.455031
Target:  5'- -gGCGCGugaagaaggagcGCGGCCUcGCGGgaaccguCGUGCCGa -3'
miRNA:   3'- gaUGCGU------------UGUCGGGaCGCC-------GCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 53914 0.66 0.446531
Target:  5'- uCUGCGCGAC-GCgCUGaagcaGGCGCaGCuCGa -3'
miRNA:   3'- -GAUGCGUUGuCGgGACg----CCGCG-CG-GC- -5'
23907 5' -60.7 NC_005262.1 + 31626 0.66 0.455981
Target:  5'- cCUGCGCGGCaAGCcgaCCUaCGGCGaUGCCc -3'
miRNA:   3'- -GAUGCGUUG-UCG---GGAcGCCGC-GCGGc -5'
23907 5' -60.7 NC_005262.1 + 49694 0.66 0.465539
Target:  5'- -cGCGCAACcugaaCCgcgaCGGCGUGCCGg -3'
miRNA:   3'- gaUGCGUUGucg--GGac--GCCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 40337 0.66 0.446531
Target:  5'- ---aGCAuCGGCUCacgGcCGGCGCGCUGa -3'
miRNA:   3'- gaugCGUuGUCGGGa--C-GCCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 39889 0.66 0.4665
Target:  5'- -aGCGCAACAGuaaguagcaccauaCCgUGCGGgugacacaauacgugUGCGCCGc -3'
miRNA:   3'- gaUGCGUUGUC--------------GGgACGCC---------------GCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 54948 0.66 0.475199
Target:  5'- gCUGCGCuuCAa-CCUGCGcgaaaaccagaaGCGCGCCa -3'
miRNA:   3'- -GAUGCGuuGUcgGGACGC------------CGCGCGGc -5'
23907 5' -60.7 NC_005262.1 + 15496 0.66 0.475199
Target:  5'- -aGCGCGGCGGCUCgcucacCGGCGaGCUGc -3'
miRNA:   3'- gaUGCGUUGUCGGGac----GCCGCgCGGC- -5'
23907 5' -60.7 NC_005262.1 + 29701 0.66 0.485939
Target:  5'- cCUGCGCAACcGCCCgcaccggGCcaagcagcauccgaaGCGCaGCCGg -3'
miRNA:   3'- -GAUGCGUUGuCGGGa------CGc--------------CGCG-CGGC- -5'
23907 5' -60.7 NC_005262.1 + 40725 0.66 0.475199
Target:  5'- -gGCGCuGAC-GCCCUcgagcacgggcgGCGGCGCGUUc -3'
miRNA:   3'- gaUGCG-UUGuCGGGA------------CGCCGCGCGGc -5'
23907 5' -60.7 NC_005262.1 + 9943 0.66 0.484958
Target:  5'- -aGCGCAGC-GCgCUGaCGGCGaagaagauUGCCGa -3'
miRNA:   3'- gaUGCGUUGuCGgGAC-GCCGC--------GCGGC- -5'
23907 5' -60.7 NC_005262.1 + 46380 0.66 0.43719
Target:  5'- -gACGCAAUcaaGGCCgaacaGGCGCGCCu -3'
miRNA:   3'- gaUGCGUUG---UCGGgacg-CCGCGCGGc -5'
23907 5' -60.7 NC_005262.1 + 25229 0.66 0.484958
Target:  5'- -cAUGCuucuuucaucCGGCCC-GCGGCGgUGCCGa -3'
miRNA:   3'- gaUGCGuu--------GUCGGGaCGCCGC-GCGGC- -5'
23907 5' -60.7 NC_005262.1 + 13365 0.66 0.475199
Target:  5'- gCUGCGcCAGCAcggaauccuGCgCCUG-GGCGCGCg- -3'
miRNA:   3'- -GAUGC-GUUGU---------CG-GGACgCCGCGCGgc -5'
23907 5' -60.7 NC_005262.1 + 13533 0.66 0.484958
Target:  5'- -gGCGCgGGCGcGCCCucguUGCGGCG-GUCGa -3'
miRNA:   3'- gaUGCG-UUGU-CGGG----ACGCCGCgCGGC- -5'
23907 5' -60.7 NC_005262.1 + 11770 0.66 0.475199
Target:  5'- -gGCGCGGCccgaCCUG-GGCGCGCUc -3'
miRNA:   3'- gaUGCGUUGucg-GGACgCCGCGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.