Results 21 - 40 of 172 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23907 | 5' | -60.7 | NC_005262.1 | + | 45190 | 0.66 | 0.465539 |
Target: 5'- aUGgGUAACGGCCUgcccucgcagGCGGCaugucCGCCGg -3' miRNA: 3'- gAUgCGUUGUCGGGa---------CGCCGc----GCGGC- -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 58698 | 0.66 | 0.465539 |
Target: 5'- -cGCGCAACaAGCUg-GCGGCaugcccgagGCGCUGa -3' miRNA: 3'- gaUGCGUUG-UCGGgaCGCCG---------CGCGGC- -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 28556 | 0.66 | 0.465539 |
Target: 5'- -gGCGCc-CAGCCgCUGCcgauCGCGCCGc -3' miRNA: 3'- gaUGCGuuGUCGG-GACGcc--GCGCGGC- -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 8499 | 0.66 | 0.474228 |
Target: 5'- aCUGCGCcgcguacucgucgGACAuGCCgaUGCGGCcgaaCGCCGa -3' miRNA: 3'- -GAUGCG-------------UUGU-CGGg-ACGCCGc---GCGGC- -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 17103 | 0.66 | 0.474228 |
Target: 5'- aCUGCGCGcGCGGCgCUGacugcauCGGCggGCGUCGg -3' miRNA: 3'- -GAUGCGU-UGUCGgGAC-------GCCG--CGCGGC- -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 14143 | 0.66 | 0.455981 |
Target: 5'- -cAUGCcGCcGCCUUGCaGGC-CGCCGa -3' miRNA: 3'- gaUGCGuUGuCGGGACG-CCGcGCGGC- -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 15678 | 0.66 | 0.475199 |
Target: 5'- -gACGCcg-AGCUCUugcgcGCGGCGCGUCa -3' miRNA: 3'- gaUGCGuugUCGGGA-----CGCCGCGCGGc -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 25723 | 0.66 | 0.465539 |
Target: 5'- gUACGuCAGCAagaucGCgCCaGCGGCcGUGCCGu -3' miRNA: 3'- gAUGC-GUUGU-----CG-GGaCGCCG-CGCGGC- -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 37250 | 0.66 | 0.465539 |
Target: 5'- -aGCGCGuCGGCCgCUucggaGUGGC-CGCCGg -3' miRNA: 3'- gaUGCGUuGUCGG-GA-----CGCCGcGCGGC- -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 25906 | 0.66 | 0.475199 |
Target: 5'- -cGCGCcaccauACuucccGCCCgUGCcuccgGGCGCGCCGa -3' miRNA: 3'- gaUGCGu-----UGu----CGGG-ACG-----CCGCGCGGC- -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 19372 | 0.66 | 0.464578 |
Target: 5'- ---aGCGACAcgaggucGCCaucgugUGCGGCGCGCgGg -3' miRNA: 3'- gaugCGUUGU-------CGGg-----ACGCCGCGCGgC- -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 46380 | 0.66 | 0.43719 |
Target: 5'- -gACGCAAUcaaGGCCgaacaGGCGCGCCu -3' miRNA: 3'- gaUGCGUUG---UCGGgacg-CCGCGCGGc -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 49694 | 0.66 | 0.465539 |
Target: 5'- -cGCGCAACcugaaCCgcgaCGGCGUGCCGg -3' miRNA: 3'- gaUGCGUUGucg--GGac--GCCGCGCGGC- -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 31626 | 0.66 | 0.455981 |
Target: 5'- cCUGCGCGGCaAGCcgaCCUaCGGCGaUGCCc -3' miRNA: 3'- -GAUGCGUUG-UCG---GGAcGCCGC-GCGGc -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 12821 | 0.66 | 0.455031 |
Target: 5'- -gGCGCGugaagaaggagcGCGGCCUcGCGGgaaccguCGUGCCGa -3' miRNA: 3'- gaUGCGU------------UGUCGGGaCGCC-------GCGCGGC- -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 1054 | 0.66 | 0.484958 |
Target: 5'- -aAUGCuGCGGCgCUGaccgccaGCGCGCCGa -3' miRNA: 3'- gaUGCGuUGUCGgGACgc-----CGCGCGGC- -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 12548 | 0.66 | 0.446531 |
Target: 5'- uUGCgGCGGCAGgUCgcgGCGGCGCucGUCGa -3' miRNA: 3'- gAUG-CGUUGUCgGGa--CGCCGCG--CGGC- -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 53914 | 0.66 | 0.446531 |
Target: 5'- uCUGCGCGAC-GCgCUGaagcaGGCGCaGCuCGa -3' miRNA: 3'- -GAUGCGUUGuCGgGACg----CCGCG-CG-GC- -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 40337 | 0.66 | 0.446531 |
Target: 5'- ---aGCAuCGGCUCacgGcCGGCGCGCUGa -3' miRNA: 3'- gaugCGUuGUCGGGa--C-GCCGCGCGGC- -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 10517 | 0.66 | 0.446531 |
Target: 5'- ---aGCAGCAGCgCgGgGGCG-GCCGa -3' miRNA: 3'- gaugCGUUGUCGgGaCgCCGCgCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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