Results 1 - 20 of 172 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23907 | 5' | -60.7 | NC_005262.1 | + | 43197 | 1.07 | 0.000466 |
Target: 5'- gCUACGCAACAGCCCUGCGGCGCGCCGc -3' miRNA: 3'- -GAUGCGUUGUCGGGACGCCGCGCGGC- -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 46529 | 0.84 | 0.025577 |
Target: 5'- -cGCGCAGCAGCCCagcGCGGCGCcgGCCGc -3' miRNA: 3'- gaUGCGUUGUCGGGa--CGCCGCG--CGGC- -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 10956 | 0.79 | 0.060953 |
Target: 5'- -cGCGCAGCAggcauucGCgCUGuCGGCGCGCCGg -3' miRNA: 3'- gaUGCGUUGU-------CGgGAC-GCCGCGCGGC- -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 26030 | 0.79 | 0.066432 |
Target: 5'- aCUACGCccAGCAGCUCgccGCGGCGCGCa- -3' miRNA: 3'- -GAUGCG--UUGUCGGGa--CGCCGCGCGgc -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 43337 | 0.78 | 0.076282 |
Target: 5'- uCUGCGgAACAGCCCacGCGGCgacgGUGCCGg -3' miRNA: 3'- -GAUGCgUUGUCGGGa-CGCCG----CGCGGC- -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 20572 | 0.77 | 0.084689 |
Target: 5'- -gACG-AGCAGCCCggcgagcagcgcGCGGCGCGCCGc -3' miRNA: 3'- gaUGCgUUGUCGGGa-----------CGCCGCGCGGC- -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 17557 | 0.76 | 0.108839 |
Target: 5'- -gAgGCGGCAGCCgCgGCGGCGCGCg- -3' miRNA: 3'- gaUgCGUUGUCGG-GaCGCCGCGCGgc -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 5131 | 0.76 | 0.103092 |
Target: 5'- aUGCGCGACGGgcggcgcugaUCCUGCucGGCGCGCUGa -3' miRNA: 3'- gAUGCGUUGUC----------GGGACG--CCGCGCGGC- -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 24332 | 0.76 | 0.097632 |
Target: 5'- -gGCGCGaucgacauGCGGCUCUGCgucGGCGCGCCu -3' miRNA: 3'- gaUGCGU--------UGUCGGGACG---CCGCGCGGc -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 52781 | 0.75 | 0.119302 |
Target: 5'- uUGCGCGACAGCCgCcucgcucgucagccgUGCGaGCGCGaCCGg -3' miRNA: 3'- gAUGCGUUGUCGG-G---------------ACGC-CGCGC-GGC- -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 52376 | 0.75 | 0.124543 |
Target: 5'- -cGCGCAccuucgGCGGCCCggcGCGGCGCGgCu -3' miRNA: 3'- gaUGCGU------UGUCGGGa--CGCCGCGCgGc -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 893 | 0.74 | 0.131396 |
Target: 5'- uUGCGCGcCAGCUC-GuCGGCGCGCUGg -3' miRNA: 3'- gAUGCGUuGUCGGGaC-GCCGCGCGGC- -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 32775 | 0.73 | 0.17113 |
Target: 5'- -cGC-CGACaAGCUCgacaccgGCGGCGCGCCGg -3' miRNA: 3'- gaUGcGUUG-UCGGGa------CGCCGCGCGGC- -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 24940 | 0.73 | 0.166717 |
Target: 5'- aUGCGC-ACAuGCCgC-GCGGCGCGCCc -3' miRNA: 3'- gAUGCGuUGU-CGG-GaCGCCGCGCGGc -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 4097 | 0.73 | 0.166717 |
Target: 5'- -gACGUAGC-GCCCgcgugGCGGCaCGCCGa -3' miRNA: 3'- gaUGCGUUGuCGGGa----CGCCGcGCGGC- -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 2656 | 0.73 | 0.162407 |
Target: 5'- cCUGCGCGGC-GCCggGCGGCGUccugGCCGc -3' miRNA: 3'- -GAUGCGUUGuCGGgaCGCCGCG----CGGC- -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 62720 | 0.73 | 0.162407 |
Target: 5'- -cGCGCAcGCA-CCCUGauCGGCGCGCUGg -3' miRNA: 3'- gaUGCGU-UGUcGGGAC--GCCGCGCGGC- -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 56528 | 0.73 | 0.166717 |
Target: 5'- ---gGCGACAcCCCUGCuGGUGUGCCGu -3' miRNA: 3'- gaugCGUUGUcGGGACG-CCGCGCGGC- -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 41554 | 0.72 | 0.18027 |
Target: 5'- aUGCGCAGgcCGGCCggcguggGCGGCGCgGCCGu -3' miRNA: 3'- gAUGCGUU--GUCGGga-----CGCCGCG-CGGC- -5' |
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23907 | 5' | -60.7 | NC_005262.1 | + | 11150 | 0.72 | 0.185001 |
Target: 5'- aUGCGCAcguuCuGCUCUGCGGUcgcGCGCCa -3' miRNA: 3'- gAUGCGUu---GuCGGGACGCCG---CGCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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