miRNA display CGI


Results 1 - 20 of 172 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23907 5' -60.7 NC_005262.1 + 43197 1.07 0.000466
Target:  5'- gCUACGCAACAGCCCUGCGGCGCGCCGc -3'
miRNA:   3'- -GAUGCGUUGUCGGGACGCCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 46529 0.84 0.025577
Target:  5'- -cGCGCAGCAGCCCagcGCGGCGCcgGCCGc -3'
miRNA:   3'- gaUGCGUUGUCGGGa--CGCCGCG--CGGC- -5'
23907 5' -60.7 NC_005262.1 + 10956 0.79 0.060953
Target:  5'- -cGCGCAGCAggcauucGCgCUGuCGGCGCGCCGg -3'
miRNA:   3'- gaUGCGUUGU-------CGgGAC-GCCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 26030 0.79 0.066432
Target:  5'- aCUACGCccAGCAGCUCgccGCGGCGCGCa- -3'
miRNA:   3'- -GAUGCG--UUGUCGGGa--CGCCGCGCGgc -5'
23907 5' -60.7 NC_005262.1 + 43337 0.78 0.076282
Target:  5'- uCUGCGgAACAGCCCacGCGGCgacgGUGCCGg -3'
miRNA:   3'- -GAUGCgUUGUCGGGa-CGCCG----CGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 20572 0.77 0.084689
Target:  5'- -gACG-AGCAGCCCggcgagcagcgcGCGGCGCGCCGc -3'
miRNA:   3'- gaUGCgUUGUCGGGa-----------CGCCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 24332 0.76 0.097632
Target:  5'- -gGCGCGaucgacauGCGGCUCUGCgucGGCGCGCCu -3'
miRNA:   3'- gaUGCGU--------UGUCGGGACG---CCGCGCGGc -5'
23907 5' -60.7 NC_005262.1 + 5131 0.76 0.103092
Target:  5'- aUGCGCGACGGgcggcgcugaUCCUGCucGGCGCGCUGa -3'
miRNA:   3'- gAUGCGUUGUC----------GGGACG--CCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 17557 0.76 0.108839
Target:  5'- -gAgGCGGCAGCCgCgGCGGCGCGCg- -3'
miRNA:   3'- gaUgCGUUGUCGG-GaCGCCGCGCGgc -5'
23907 5' -60.7 NC_005262.1 + 52781 0.75 0.119302
Target:  5'- uUGCGCGACAGCCgCcucgcucgucagccgUGCGaGCGCGaCCGg -3'
miRNA:   3'- gAUGCGUUGUCGG-G---------------ACGC-CGCGC-GGC- -5'
23907 5' -60.7 NC_005262.1 + 52376 0.75 0.124543
Target:  5'- -cGCGCAccuucgGCGGCCCggcGCGGCGCGgCu -3'
miRNA:   3'- gaUGCGU------UGUCGGGa--CGCCGCGCgGc -5'
23907 5' -60.7 NC_005262.1 + 893 0.74 0.131396
Target:  5'- uUGCGCGcCAGCUC-GuCGGCGCGCUGg -3'
miRNA:   3'- gAUGCGUuGUCGGGaC-GCCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 2656 0.73 0.162407
Target:  5'- cCUGCGCGGC-GCCggGCGGCGUccugGCCGc -3'
miRNA:   3'- -GAUGCGUUGuCGGgaCGCCGCG----CGGC- -5'
23907 5' -60.7 NC_005262.1 + 62720 0.73 0.162407
Target:  5'- -cGCGCAcGCA-CCCUGauCGGCGCGCUGg -3'
miRNA:   3'- gaUGCGU-UGUcGGGAC--GCCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 4097 0.73 0.166717
Target:  5'- -gACGUAGC-GCCCgcgugGCGGCaCGCCGa -3'
miRNA:   3'- gaUGCGUUGuCGGGa----CGCCGcGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 24940 0.73 0.166717
Target:  5'- aUGCGC-ACAuGCCgC-GCGGCGCGCCc -3'
miRNA:   3'- gAUGCGuUGU-CGG-GaCGCCGCGCGGc -5'
23907 5' -60.7 NC_005262.1 + 56528 0.73 0.166717
Target:  5'- ---gGCGACAcCCCUGCuGGUGUGCCGu -3'
miRNA:   3'- gaugCGUUGUcGGGACG-CCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 32775 0.73 0.17113
Target:  5'- -cGC-CGACaAGCUCgacaccgGCGGCGCGCCGg -3'
miRNA:   3'- gaUGcGUUG-UCGGGa------CGCCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 49169 0.72 0.18027
Target:  5'- --cCGCAuCGGCCgCaGCGGCGCGCaCGg -3'
miRNA:   3'- gauGCGUuGUCGG-GaCGCCGCGCG-GC- -5'
23907 5' -60.7 NC_005262.1 + 47441 0.72 0.18027
Target:  5'- -aACGCGGCGGCgCCgauCaGCGCGCCGa -3'
miRNA:   3'- gaUGCGUUGUCG-GGac-GcCGCGCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.