miRNA display CGI


Results 21 - 40 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23907 5' -60.7 NC_005262.1 + 41554 0.72 0.18027
Target:  5'- aUGCGCAGgcCGGCCggcguggGCGGCGCgGCCGu -3'
miRNA:   3'- gAUGCGUU--GUCGGga-----CGCCGCG-CGGC- -5'
23907 5' -60.7 NC_005262.1 + 11150 0.72 0.185001
Target:  5'- aUGCGCAcguuCuGCUCUGCGGUcgcGCGCCa -3'
miRNA:   3'- gAUGCGUu---GuCGGGACGCCG---CGCGGc -5'
23907 5' -60.7 NC_005262.1 + 5205 0.72 0.18984
Target:  5'- -gGCGCcccauCAGCCCauuccaUGcCGGCGUGCCGa -3'
miRNA:   3'- gaUGCGuu---GUCGGG------AC-GCCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 19969 0.72 0.205031
Target:  5'- -cGCGCGGcCGGCCC-GCGGCcGUGUCGc -3'
miRNA:   3'- gaUGCGUU-GUCGGGaCGCCG-CGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 1888 0.72 0.205031
Target:  5'- ---gGC-GCAGCCCUGCGGCGUaUCGu -3'
miRNA:   3'- gaugCGuUGUCGGGACGCCGCGcGGC- -5'
23907 5' -60.7 NC_005262.1 + 33896 0.71 0.210324
Target:  5'- gUGCGUcggccGGCGGCCCgaucgguaGCGGCGgUGCCGa -3'
miRNA:   3'- gAUGCG-----UUGUCGGGa-------CGCCGC-GCGGC- -5'
23907 5' -60.7 NC_005262.1 + 17540 0.71 0.210324
Target:  5'- --cUGCAugAGCCCuUGCGcgaaCGCGCCGa -3'
miRNA:   3'- gauGCGUugUCGGG-ACGCc---GCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 43834 0.71 0.210324
Target:  5'- --cCGCGGgcCGGCCgCgcgcgGCGGUGCGCCGg -3'
miRNA:   3'- gauGCGUU--GUCGG-Ga----CGCCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 12514 0.71 0.215734
Target:  5'- aUGCGCAGCAGCCg-GCGGC-CGgUGa -3'
miRNA:   3'- gAUGCGUUGUCGGgaCGCCGcGCgGC- -5'
23907 5' -60.7 NC_005262.1 + 13474 0.71 0.219592
Target:  5'- cCUGCGCGGCGGgCgCUGCGGCcggcuccucaauccGCGCgGc -3'
miRNA:   3'- -GAUGCGUUGUCgG-GACGCCG--------------CGCGgC- -5'
23907 5' -60.7 NC_005262.1 + 39941 0.71 0.226913
Target:  5'- -gACG-GGCGGCaCCggcaaggGCGGCGUGCCGg -3'
miRNA:   3'- gaUGCgUUGUCG-GGa------CGCCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 17343 0.71 0.226913
Target:  5'- -gGCGCGGCauucgGGUCCggcgcggGCGGCGCGgCGg -3'
miRNA:   3'- gaUGCGUUG-----UCGGGa------CGCCGCGCgGC- -5'
23907 5' -60.7 NC_005262.1 + 12728 0.71 0.226913
Target:  5'- cCUGCGCGGCgAGCaCCUGaUGGUGC-CCGu -3'
miRNA:   3'- -GAUGCGUUG-UCG-GGAC-GCCGCGcGGC- -5'
23907 5' -60.7 NC_005262.1 + 52625 0.71 0.232684
Target:  5'- -aGCGCAcCGGCUC-GUGGCGCGCg- -3'
miRNA:   3'- gaUGCGUuGUCGGGaCGCCGCGCGgc -5'
23907 5' -60.7 NC_005262.1 + 63706 0.71 0.232684
Target:  5'- aUGCGCAGaAG-CgUGCGGCGCgGCCGa -3'
miRNA:   3'- gAUGCGUUgUCgGgACGCCGCG-CGGC- -5'
23907 5' -60.7 NC_005262.1 + 4916 0.71 0.232684
Target:  5'- -cGCgGCAGCAGCCaacgcGCGGagcuGCGCCGg -3'
miRNA:   3'- gaUG-CGUUGUCGGga---CGCCg---CGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 48034 0.7 0.25012
Target:  5'- -cACGCAGCAGCCggccGCGcccgcaaGCGCGUCGg -3'
miRNA:   3'- gaUGCGUUGUCGGga--CGC-------CGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 49227 0.7 0.25074
Target:  5'- gUGCGCGugAGCgCC-GCGGCGagaCGCCu -3'
miRNA:   3'- gAUGCGUugUCG-GGaCGCCGC---GCGGc -5'
23907 5' -60.7 NC_005262.1 + 16868 0.7 0.25074
Target:  5'- -gAUGCAGgcGCCCgGCcGCGCGCCGg -3'
miRNA:   3'- gaUGCGUUguCGGGaCGcCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 58904 0.7 0.257011
Target:  5'- gCUGCGCGAuCAGgCCgGCGGCcCGaCCGa -3'
miRNA:   3'- -GAUGCGUU-GUCgGGaCGCCGcGC-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.