miRNA display CGI


Results 21 - 40 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23907 5' -60.7 NC_005262.1 + 15678 0.66 0.475199
Target:  5'- -gACGCcg-AGCUCUugcgcGCGGCGCGUCa -3'
miRNA:   3'- gaUGCGuugUCGGGA-----CGCCGCGCGGc -5'
23907 5' -60.7 NC_005262.1 + 25906 0.66 0.475199
Target:  5'- -cGCGCcaccauACuucccGCCCgUGCcuccgGGCGCGCCGa -3'
miRNA:   3'- gaUGCGu-----UGu----CGGG-ACG-----CCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 17103 0.66 0.474228
Target:  5'- aCUGCGCGcGCGGCgCUGacugcauCGGCggGCGUCGg -3'
miRNA:   3'- -GAUGCGU-UGUCGgGAC-------GCCG--CGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 8499 0.66 0.474228
Target:  5'- aCUGCGCcgcguacucgucgGACAuGCCgaUGCGGCcgaaCGCCGa -3'
miRNA:   3'- -GAUGCG-------------UUGU-CGGg-ACGCCGc---GCGGC- -5'
23907 5' -60.7 NC_005262.1 + 39889 0.66 0.4665
Target:  5'- -aGCGCAACAGuaaguagcaccauaCCgUGCGGgugacacaauacgugUGCGCCGc -3'
miRNA:   3'- gaUGCGUUGUC--------------GGgACGCC---------------GCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 25723 0.66 0.465539
Target:  5'- gUACGuCAGCAagaucGCgCCaGCGGCcGUGCCGu -3'
miRNA:   3'- gAUGC-GUUGU-----CG-GGaCGCCG-CGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 37250 0.66 0.465539
Target:  5'- -aGCGCGuCGGCCgCUucggaGUGGC-CGCCGg -3'
miRNA:   3'- gaUGCGUuGUCGG-GA-----CGCCGcGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 45190 0.66 0.465539
Target:  5'- aUGgGUAACGGCCUgcccucgcagGCGGCaugucCGCCGg -3'
miRNA:   3'- gAUgCGUUGUCGGGa---------CGCCGc----GCGGC- -5'
23907 5' -60.7 NC_005262.1 + 58698 0.66 0.465539
Target:  5'- -cGCGCAACaAGCUg-GCGGCaugcccgagGCGCUGa -3'
miRNA:   3'- gaUGCGUUG-UCGGgaCGCCG---------CGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 49694 0.66 0.465539
Target:  5'- -cGCGCAACcugaaCCgcgaCGGCGUGCCGg -3'
miRNA:   3'- gaUGCGUUGucg--GGac--GCCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 28556 0.66 0.465539
Target:  5'- -gGCGCc-CAGCCgCUGCcgauCGCGCCGc -3'
miRNA:   3'- gaUGCGuuGUCGG-GACGcc--GCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 19372 0.66 0.464578
Target:  5'- ---aGCGACAcgaggucGCCaucgugUGCGGCGCGCgGg -3'
miRNA:   3'- gaugCGUUGU-------CGGg-----ACGCCGCGCGgC- -5'
23907 5' -60.7 NC_005262.1 + 31626 0.66 0.455981
Target:  5'- cCUGCGCGGCaAGCcgaCCUaCGGCGaUGCCc -3'
miRNA:   3'- -GAUGCGUUG-UCG---GGAcGCCGC-GCGGc -5'
23907 5' -60.7 NC_005262.1 + 14143 0.66 0.455981
Target:  5'- -cAUGCcGCcGCCUUGCaGGC-CGCCGa -3'
miRNA:   3'- gaUGCGuUGuCGGGACG-CCGcGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 12821 0.66 0.455031
Target:  5'- -gGCGCGugaagaaggagcGCGGCCUcGCGGgaaccguCGUGCCGa -3'
miRNA:   3'- gaUGCGU------------UGUCGGGaCGCC-------GCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 55595 0.66 0.446531
Target:  5'- -cGCGCGgaucaucgcuGCGGCgCCUucCGGCGUGCUGa -3'
miRNA:   3'- gaUGCGU----------UGUCG-GGAc-GCCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 10517 0.66 0.446531
Target:  5'- ---aGCAGCAGCgCgGgGGCG-GCCGa -3'
miRNA:   3'- gaugCGUUGUCGgGaCgCCGCgCGGC- -5'
23907 5' -60.7 NC_005262.1 + 40337 0.66 0.446531
Target:  5'- ---aGCAuCGGCUCacgGcCGGCGCGCUGa -3'
miRNA:   3'- gaugCGUuGUCGGGa--C-GCCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 53914 0.66 0.446531
Target:  5'- uCUGCGCGAC-GCgCUGaagcaGGCGCaGCuCGa -3'
miRNA:   3'- -GAUGCGUUGuCGgGACg----CCGCG-CG-GC- -5'
23907 5' -60.7 NC_005262.1 + 12548 0.66 0.446531
Target:  5'- uUGCgGCGGCAGgUCgcgGCGGCGCucGUCGa -3'
miRNA:   3'- gAUG-CGUUGUCgGGa--CGCCGCG--CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.