miRNA display CGI


Results 41 - 60 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23907 5' -60.7 NC_005262.1 + 52459 0.66 0.446531
Target:  5'- -cGCGCgAGCGGCguCUUGCGGaggaGgGCCGa -3'
miRNA:   3'- gaUGCG-UUGUCG--GGACGCCg---CgCGGC- -5'
23907 5' -60.7 NC_005262.1 + 28812 0.66 0.446531
Target:  5'- gCUGCcCGGCuGCCUggagcuucgacuUGCGGCcgaGCGCCGc -3'
miRNA:   3'- -GAUGcGUUGuCGGG------------ACGCCG---CGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 16040 0.66 0.443717
Target:  5'- -cGCGCGaugccggguucgccGCGGCCg-GCGGCGCaCCa -3'
miRNA:   3'- gaUGCGU--------------UGUCGGgaCGCCGCGcGGc -5'
23907 5' -60.7 NC_005262.1 + 3142 0.66 0.43719
Target:  5'- -aGCGCGAUgagugcuuGCCC-GCGGUGCucGCCGc -3'
miRNA:   3'- gaUGCGUUGu-------CGGGaCGCCGCG--CGGC- -5'
23907 5' -60.7 NC_005262.1 + 46380 0.66 0.43719
Target:  5'- -gACGCAAUcaaGGCCgaacaGGCGCGCCu -3'
miRNA:   3'- gaUGCGUUG---UCGGgacg-CCGCGCGGc -5'
23907 5' -60.7 NC_005262.1 + 32522 0.66 0.43719
Target:  5'- uCUugGCcGCGGacgaCUGCGGC-UGCCGa -3'
miRNA:   3'- -GAugCGuUGUCgg--GACGCCGcGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 9489 0.66 0.43719
Target:  5'- -gACGUccuGGCGGCUCaUGUucgagaGGCGCGCCa -3'
miRNA:   3'- gaUGCG---UUGUCGGG-ACG------CCGCGCGGc -5'
23907 5' -60.7 NC_005262.1 + 4656 0.66 0.436262
Target:  5'- aUGCGCGcggcgacGCGGCCCgGcCGGUuCGCCu -3'
miRNA:   3'- gAUGCGU-------UGUCGGGaC-GCCGcGCGGc -5'
23907 5' -60.7 NC_005262.1 + 31165 0.67 0.427963
Target:  5'- -cGCGCAAUcGCCauacggcGUGGUGCGCUGc -3'
miRNA:   3'- gaUGCGUUGuCGGga-----CGCCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 23660 0.67 0.427963
Target:  5'- cCUGCGUGaauccguggauGCcGCCCgaGCGGCGCGUg- -3'
miRNA:   3'- -GAUGCGU-----------UGuCGGGa-CGCCGCGCGgc -5'
23907 5' -60.7 NC_005262.1 + 4559 0.67 0.427963
Target:  5'- -cGCGCGGCGcaucucGCgCCaGCGGCGgCGCUGc -3'
miRNA:   3'- gaUGCGUUGU------CG-GGaCGCCGC-GCGGC- -5'
23907 5' -60.7 NC_005262.1 + 10717 0.67 0.427963
Target:  5'- uCUGCGgauaCAGCAGCUUcGCGauCGCGCCGg -3'
miRNA:   3'- -GAUGC----GUUGUCGGGaCGCc-GCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 4420 0.67 0.427963
Target:  5'- gCUGCGCG--AGCgCCUGgagcuCGGCGuUGCCGg -3'
miRNA:   3'- -GAUGCGUugUCG-GGAC-----GCCGC-GCGGC- -5'
23907 5' -60.7 NC_005262.1 + 47865 0.67 0.427963
Target:  5'- --gUGCAGCAcuuccuccucGCUCUGCGGCGCaUCGc -3'
miRNA:   3'- gauGCGUUGU----------CGGGACGCCGCGcGGC- -5'
23907 5' -60.7 NC_005262.1 + 14247 0.67 0.426132
Target:  5'- uCUGCGCGACcugcuggagcgcGCUCUGCGGCaGCuCCu -3'
miRNA:   3'- -GAUGCGUUGu-----------CGGGACGCCG-CGcGGc -5'
23907 5' -60.7 NC_005262.1 + 13468 0.67 0.418852
Target:  5'- -gGCGCGA-AGCCCgcgcGCGucGCGCGCUa -3'
miRNA:   3'- gaUGCGUUgUCGGGa---CGC--CGCGCGGc -5'
23907 5' -60.7 NC_005262.1 + 10457 0.67 0.418852
Target:  5'- -cGCGCGGuCGGCgagguaGCGGCGCGCgCGg -3'
miRNA:   3'- gaUGCGUU-GUCGgga---CGCCGCGCG-GC- -5'
23907 5' -60.7 NC_005262.1 + 4527 0.67 0.418852
Target:  5'- -cGCGCGACGcgcucguuucGCuCCUGC-GCGUGCUGa -3'
miRNA:   3'- gaUGCGUUGU----------CG-GGACGcCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 17258 0.67 0.418852
Target:  5'- ---aGCGGCGGCCg-GCGcCGCGCUGg -3'
miRNA:   3'- gaugCGUUGUCGGgaCGCcGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 38549 0.67 0.418852
Target:  5'- -gGCGCAGgAGCCg-GCGuuGCGCGCgGu -3'
miRNA:   3'- gaUGCGUUgUCGGgaCGC--CGCGCGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.