miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23907 5' -60.7 NC_005262.1 + 893 0.74 0.131396
Target:  5'- uUGCGCGcCAGCUC-GuCGGCGCGCUGg -3'
miRNA:   3'- gAUGCGUuGUCGGGaC-GCCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 1054 0.66 0.484958
Target:  5'- -aAUGCuGCGGCgCUGaccgccaGCGCGCCGa -3'
miRNA:   3'- gaUGCGuUGUCGgGACgc-----CGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 1177 0.69 0.326874
Target:  5'- cCUGCGCGGaAGCCCagUGCGaGUuCGCCGc -3'
miRNA:   3'- -GAUGCGUUgUCGGG--ACGC-CGcGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 1888 0.72 0.205031
Target:  5'- ---gGC-GCAGCCCUGCGGCGUaUCGu -3'
miRNA:   3'- gaugCGuUGUCGGGACGCCGCGcGGC- -5'
23907 5' -60.7 NC_005262.1 + 2656 0.73 0.162407
Target:  5'- cCUGCGCGGC-GCCggGCGGCGUccugGCCGc -3'
miRNA:   3'- -GAUGCGUUGuCGGgaCGCCGCG----CGGC- -5'
23907 5' -60.7 NC_005262.1 + 2757 0.68 0.342431
Target:  5'- aUGCGCuuCAGCacgGCGGCggGUGCCGc -3'
miRNA:   3'- gAUGCGuuGUCGggaCGCCG--CGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 3142 0.66 0.43719
Target:  5'- -aGCGCGAUgagugcuuGCCC-GCGGUGCucGCCGc -3'
miRNA:   3'- gaUGCGUUGu-------CGGGaCGCCGCG--CGGC- -5'
23907 5' -60.7 NC_005262.1 + 4097 0.73 0.166717
Target:  5'- -gACGUAGC-GCCCgcgugGCGGCaCGCCGa -3'
miRNA:   3'- gaUGCGUUGuCGGGa----CGCCGcGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 4420 0.67 0.427963
Target:  5'- gCUGCGCG--AGCgCCUGgagcuCGGCGuUGCCGg -3'
miRNA:   3'- -GAUGCGUugUCG-GGAC-----GCCGC-GCGGC- -5'
23907 5' -60.7 NC_005262.1 + 4527 0.67 0.418852
Target:  5'- -cGCGCGACGcgcucguuucGCuCCUGC-GCGUGCUGa -3'
miRNA:   3'- gaUGCGUUGU----------CG-GGACGcCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 4559 0.67 0.427963
Target:  5'- -cGCGCGGCGcaucucGCgCCaGCGGCGgCGCUGc -3'
miRNA:   3'- gaUGCGUUGU------CG-GGaCGCCGC-GCGGC- -5'
23907 5' -60.7 NC_005262.1 + 4656 0.66 0.436262
Target:  5'- aUGCGCGcggcgacGCGGCCCgGcCGGUuCGCCu -3'
miRNA:   3'- gAUGCGU-------UGUCGGGaC-GCCGcGCGGc -5'
23907 5' -60.7 NC_005262.1 + 4834 0.69 0.319294
Target:  5'- -cGC-CGGCGGCCggcugguucgaCUGCuGCGCGCCGa -3'
miRNA:   3'- gaUGcGUUGUCGG-----------GACGcCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 4916 0.71 0.232684
Target:  5'- -cGCgGCAGCAGCCaacgcGCGGagcuGCGCCGg -3'
miRNA:   3'- gaUG-CGUUGUCGGga---CGCCg---CGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 5082 0.68 0.350408
Target:  5'- -gGCGCGugcgacCGGCUCgGCGGUGCGCg- -3'
miRNA:   3'- gaUGCGUu-----GUCGGGaCGCCGCGCGgc -5'
23907 5' -60.7 NC_005262.1 + 5131 0.76 0.103092
Target:  5'- aUGCGCGACGGgcggcgcugaUCCUGCucGGCGCGCUGa -3'
miRNA:   3'- gAUGCGUUGUC----------GGGACG--CCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 5205 0.72 0.18984
Target:  5'- -gGCGCcccauCAGCCCauuccaUGcCGGCGUGCCGa -3'
miRNA:   3'- gaUGCGuu---GUCGGG------AC-GCCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 5450 0.67 0.392241
Target:  5'- -gGCGCGGCAuGaCCUcGCGGCGaaccuCGCCGu -3'
miRNA:   3'- gaUGCGUUGU-C-GGGaCGCCGC-----GCGGC- -5'
23907 5' -60.7 NC_005262.1 + 6049 0.66 0.475199
Target:  5'- -cGCGCAAUGcccucgagcGCCUugacgauacucaUGCGGCGCGCg- -3'
miRNA:   3'- gaUGCGUUGU---------CGGG------------ACGCCGCGCGgc -5'
23907 5' -60.7 NC_005262.1 + 6677 0.66 0.484958
Target:  5'- aCU-CGCcGgAGCCCUugaGCuGCGUGCCGu -3'
miRNA:   3'- -GAuGCGuUgUCGGGA---CGcCGCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.