miRNA display CGI


Results 21 - 40 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23907 5' -60.7 NC_005262.1 + 7514 0.69 0.290299
Target:  5'- -gACGCAuccaucggGCAgGUUCgGCGGCGCGUCGg -3'
miRNA:   3'- gaUGCGU--------UGU-CGGGaCGCCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 8499 0.66 0.474228
Target:  5'- aCUGCGCcgcguacucgucgGACAuGCCgaUGCGGCcgaaCGCCGa -3'
miRNA:   3'- -GAUGCG-------------UUGU-CGGg-ACGCCGc---GCGGC- -5'
23907 5' -60.7 NC_005262.1 + 9489 0.66 0.43719
Target:  5'- -gACGUccuGGCGGCUCaUGUucgagaGGCGCGCCa -3'
miRNA:   3'- gaUGCG---UUGUCGGG-ACG------CCGCGCGGc -5'
23907 5' -60.7 NC_005262.1 + 9943 0.66 0.484958
Target:  5'- -aGCGCAGC-GCgCUGaCGGCGaagaagauUGCCGa -3'
miRNA:   3'- gaUGCGUUGuCGgGAC-GCCGC--------GCGGC- -5'
23907 5' -60.7 NC_005262.1 + 10083 0.67 0.40986
Target:  5'- -aGCGCcACGGCCUUcgacGCGGCcggguucugcGCGCCc -3'
miRNA:   3'- gaUGCGuUGUCGGGA----CGCCG----------CGCGGc -5'
23907 5' -60.7 NC_005262.1 + 10213 0.67 0.40986
Target:  5'- uUGCGCGGuacaugcugcCGGUCagcGCGuGCGCGCCGa -3'
miRNA:   3'- gAUGCGUU----------GUCGGga-CGC-CGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 10288 0.67 0.404523
Target:  5'- uCUGgGC--CGGcCCCUGCGGCGUcugcacuucggccguGCCGa -3'
miRNA:   3'- -GAUgCGuuGUC-GGGACGCCGCG---------------CGGC- -5'
23907 5' -60.7 NC_005262.1 + 10457 0.67 0.418852
Target:  5'- -cGCGCGGuCGGCgagguaGCGGCGCGCgCGg -3'
miRNA:   3'- gaUGCGUU-GUCGgga---CGCCGCGCG-GC- -5'
23907 5' -60.7 NC_005262.1 + 10517 0.66 0.446531
Target:  5'- ---aGCAGCAGCgCgGgGGCG-GCCGa -3'
miRNA:   3'- gaugCGUUGUCGgGaCgCCGCgCGGC- -5'
23907 5' -60.7 NC_005262.1 + 10717 0.67 0.427963
Target:  5'- uCUGCGgauaCAGCAGCUUcGCGauCGCGCCGg -3'
miRNA:   3'- -GAUGC----GUUGUCGGGaCGCc-GCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 10859 0.68 0.366754
Target:  5'- ---gGCGA-AGCCCagGCGGCGCagGCCGu -3'
miRNA:   3'- gaugCGUUgUCGGGa-CGCCGCG--CGGC- -5'
23907 5' -60.7 NC_005262.1 + 10956 0.79 0.060953
Target:  5'- -cGCGCAGCAggcauucGCgCUGuCGGCGCGCCGg -3'
miRNA:   3'- gaUGCGUUGU-------CGgGAC-GCCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 11150 0.72 0.185001
Target:  5'- aUGCGCAcguuCuGCUCUGCGGUcgcGCGCCa -3'
miRNA:   3'- gAUGCGUu---GuCGGGACGCCG---CGCGGc -5'
23907 5' -60.7 NC_005262.1 + 11157 0.68 0.358516
Target:  5'- --uCGCAcggGCGGCCCUGCGacaaCGCCGa -3'
miRNA:   3'- gauGCGU---UGUCGGGACGCcgc-GCGGC- -5'
23907 5' -60.7 NC_005262.1 + 11770 0.66 0.475199
Target:  5'- -gGCGCGGCccgaCCUG-GGCGCGCUc -3'
miRNA:   3'- gaUGCGUUGucg-GGACgCCGCGCGGc -5'
23907 5' -60.7 NC_005262.1 + 12369 0.68 0.334586
Target:  5'- -gACGguAUcGCCCUcGCGcGCGCcGCCGa -3'
miRNA:   3'- gaUGCguUGuCGGGA-CGC-CGCG-CGGC- -5'
23907 5' -60.7 NC_005262.1 + 12514 0.71 0.215734
Target:  5'- aUGCGCAGCAGCCg-GCGGC-CGgUGa -3'
miRNA:   3'- gAUGCGUUGUCGGgaCGCCGcGCgGC- -5'
23907 5' -60.7 NC_005262.1 + 12548 0.66 0.446531
Target:  5'- uUGCgGCGGCAGgUCgcgGCGGCGCucGUCGa -3'
miRNA:   3'- gAUG-CGUUGUCgGGa--CGCCGCG--CGGC- -5'
23907 5' -60.7 NC_005262.1 + 12728 0.71 0.226913
Target:  5'- cCUGCGCGGCgAGCaCCUGaUGGUGC-CCGu -3'
miRNA:   3'- -GAUGCGUUG-UCG-GGAC-GCCGCGcGGC- -5'
23907 5' -60.7 NC_005262.1 + 12821 0.66 0.455031
Target:  5'- -gGCGCGugaagaaggagcGCGGCCUcGCGGgaaccguCGUGCCGa -3'
miRNA:   3'- gaUGCGU------------UGUCGGGaCGCC-------GCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.