miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23907 5' -60.7 NC_005262.1 + 63706 0.71 0.232684
Target:  5'- aUGCGCAGaAG-CgUGCGGCGCgGCCGa -3'
miRNA:   3'- gAUGCGUUgUCgGgACGCCGCG-CGGC- -5'
23907 5' -60.7 NC_005262.1 + 62720 0.73 0.162407
Target:  5'- -cGCGCAcGCA-CCCUGauCGGCGCGCUGg -3'
miRNA:   3'- gaUGCGU-UGUcGGGAC--GCCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 62296 0.69 0.297349
Target:  5'- --cCGCAGCcuCCCUccgcagaugcaGCGGCaGCGCCGg -3'
miRNA:   3'- gauGCGUUGucGGGA-----------CGCCG-CGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 61943 0.68 0.348001
Target:  5'- cCUACGCGACcaagcaGGCaaccgcaugcgcagCCUGCGGCGagcacaagcacaCGCCGc -3'
miRNA:   3'- -GAUGCGUUG------UCG--------------GGACGCCGC------------GCGGC- -5'
23907 5' -60.7 NC_005262.1 + 61149 0.67 0.383618
Target:  5'- -gGCGCAGCAGaUCgcgGCGGCGgGCg- -3'
miRNA:   3'- gaUGCGUUGUCgGGa--CGCCGCgCGgc -5'
23907 5' -60.7 NC_005262.1 + 60481 0.69 0.300206
Target:  5'- gCUGCGCGAUcagggcgagacgccgGGCCgC-GCGGCGCagGCCGc -3'
miRNA:   3'- -GAUGCGUUG---------------UCGG-GaCGCCGCG--CGGC- -5'
23907 5' -60.7 NC_005262.1 + 60070 0.68 0.334586
Target:  5'- cCUGCGCAAC-GCCgCgcGCGaCGCGCUGa -3'
miRNA:   3'- -GAUGCGUUGuCGG-Ga-CGCcGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 58955 0.69 0.307441
Target:  5'- -cGCGCAGCAGUcgaaccagccggccgCCgGCGGCcucacgccucccGCGCCGu -3'
miRNA:   3'- gaUGCGUUGUCG---------------GGaCGCCG------------CGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 58904 0.7 0.257011
Target:  5'- gCUGCGCGAuCAGgCCgGCGGCcCGaCCGa -3'
miRNA:   3'- -GAUGCGUU-GUCgGGaCGCCGcGC-GGC- -5'
23907 5' -60.7 NC_005262.1 + 58698 0.66 0.465539
Target:  5'- -cGCGCAACaAGCUg-GCGGCaugcccgagGCGCUGa -3'
miRNA:   3'- gaUGCGUUG-UCGGgaCGCCG---------CGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 58589 0.66 0.475199
Target:  5'- --gUGCAggAUAcGCCCU-CGGuCGCGCCGg -3'
miRNA:   3'- gauGCGU--UGU-CGGGAcGCC-GCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 57280 0.7 0.283381
Target:  5'- -aGCGUGACGGCgagGuCGGCGCGCUGa -3'
miRNA:   3'- gaUGCGUUGUCGggaC-GCCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 57277 0.67 0.383618
Target:  5'- -cGCGCAgcucACGGCCC-GCGuGCagcagaacgaGCGCCGc -3'
miRNA:   3'- gaUGCGU----UGUCGGGaCGC-CG----------CGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 56528 0.73 0.166717
Target:  5'- ---gGCGACAcCCCUGCuGGUGUGCCGu -3'
miRNA:   3'- gaugCGUUGUcGGGACG-CCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 56089 0.7 0.263409
Target:  5'- -aGCGCAagauGCAGCUCgaggagGCGGCGCaGCUc -3'
miRNA:   3'- gaUGCGU----UGUCGGGa-----CGCCGCG-CGGc -5'
23907 5' -60.7 NC_005262.1 + 55623 0.7 0.283381
Target:  5'- cCUGCGCAGCaagaAGCCggGCcGCGCGCuCGu -3'
miRNA:   3'- -GAUGCGUUG----UCGGgaCGcCGCGCG-GC- -5'
23907 5' -60.7 NC_005262.1 + 55595 0.66 0.446531
Target:  5'- -cGCGCGgaucaucgcuGCGGCgCCUucCGGCGUGCUGa -3'
miRNA:   3'- gaUGCGU----------UGUCG-GGAc-GCCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 54948 0.66 0.475199
Target:  5'- gCUGCGCuuCAa-CCUGCGcgaaaaccagaaGCGCGCCa -3'
miRNA:   3'- -GAUGCGuuGUcgGGACGC------------CGCGCGGc -5'
23907 5' -60.7 NC_005262.1 + 54619 0.66 0.484958
Target:  5'- uCUGCGcCGACcGCCaUGCGuGaagGCGCCGg -3'
miRNA:   3'- -GAUGC-GUUGuCGGgACGC-Cg--CGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 54465 0.68 0.334586
Target:  5'- -aGCGCAACGucgaggcgcuGCUC-GCGGUGCaGCCGa -3'
miRNA:   3'- gaUGCGUUGU----------CGGGaCGCCGCG-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.