miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23907 5' -60.7 NC_005262.1 + 17064 0.7 0.283381
Target:  5'- -cGCGCGcACGGCgCCgauaGGCGCGCCc -3'
miRNA:   3'- gaUGCGU-UGUCG-GGacg-CCGCGCGGc -5'
23907 5' -60.7 NC_005262.1 + 33896 0.71 0.210324
Target:  5'- gUGCGUcggccGGCGGCCCgaucgguaGCGGCGgUGCCGa -3'
miRNA:   3'- gAUGCG-----UUGUCGGGa-------CGCCGC-GCGGC- -5'
23907 5' -60.7 NC_005262.1 + 43834 0.71 0.210324
Target:  5'- --cCGCGGgcCGGCCgCgcgcgGCGGUGCGCCGg -3'
miRNA:   3'- gauGCGUU--GUCGG-Ga----CGCCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 52625 0.71 0.232684
Target:  5'- -aGCGCAcCGGCUC-GUGGCGCGCg- -3'
miRNA:   3'- gaUGCGUuGUCGGGaCGCCGCGCGgc -5'
23907 5' -60.7 NC_005262.1 + 48034 0.7 0.25012
Target:  5'- -cACGCAGCAGCCggccGCGcccgcaaGCGCGUCGg -3'
miRNA:   3'- gaUGCGUUGUCGGga--CGC-------CGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 16868 0.7 0.25074
Target:  5'- -gAUGCAGgcGCCCgGCcGCGCGCCGg -3'
miRNA:   3'- gaUGCGUUguCGGGaCGcCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 12919 0.7 0.257011
Target:  5'- -gACGaCGACAaCCUgcGCGGCGCGCUGa -3'
miRNA:   3'- gaUGC-GUUGUcGGGa-CGCCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 58904 0.7 0.257011
Target:  5'- gCUGCGCGAuCAGgCCgGCGGCcCGaCCGa -3'
miRNA:   3'- -GAUGCGUU-GUCgGGaCGCCGcGC-GGC- -5'
23907 5' -60.7 NC_005262.1 + 44989 0.7 0.263409
Target:  5'- --gUGCAGCAGUCCgcgcggcagGCGGCGgaCGCCa -3'
miRNA:   3'- gauGCGUUGUCGGGa--------CGCCGC--GCGGc -5'
23907 5' -60.7 NC_005262.1 + 49169 0.72 0.18027
Target:  5'- --cCGCAuCGGCCgCaGCGGCGCGCaCGg -3'
miRNA:   3'- gauGCGUuGUCGG-GaCGCCGCGCG-GC- -5'
23907 5' -60.7 NC_005262.1 + 32775 0.73 0.17113
Target:  5'- -cGC-CGACaAGCUCgacaccgGCGGCGCGCCGg -3'
miRNA:   3'- gaUGcGUUG-UCGGGa------CGCCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 24940 0.73 0.166717
Target:  5'- aUGCGC-ACAuGCCgC-GCGGCGCGCCc -3'
miRNA:   3'- gAUGCGuUGU-CGG-GaCGCCGCGCGGc -5'
23907 5' -60.7 NC_005262.1 + 10956 0.79 0.060953
Target:  5'- -cGCGCAGCAggcauucGCgCUGuCGGCGCGCCGg -3'
miRNA:   3'- gaUGCGUUGU-------CGgGAC-GCCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 26030 0.79 0.066432
Target:  5'- aCUACGCccAGCAGCUCgccGCGGCGCGCa- -3'
miRNA:   3'- -GAUGCG--UUGUCGGGa--CGCCGCGCGgc -5'
23907 5' -60.7 NC_005262.1 + 20572 0.77 0.084689
Target:  5'- -gACG-AGCAGCCCggcgagcagcgcGCGGCGCGCCGc -3'
miRNA:   3'- gaUGCgUUGUCGGGa-----------CGCCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 24332 0.76 0.097632
Target:  5'- -gGCGCGaucgacauGCGGCUCUGCgucGGCGCGCCu -3'
miRNA:   3'- gaUGCGU--------UGUCGGGACG---CCGCGCGGc -5'
23907 5' -60.7 NC_005262.1 + 5131 0.76 0.103092
Target:  5'- aUGCGCGACGGgcggcgcugaUCCUGCucGGCGCGCUGa -3'
miRNA:   3'- gAUGCGUUGUC----------GGGACG--CCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 17557 0.76 0.108839
Target:  5'- -gAgGCGGCAGCCgCgGCGGCGCGCg- -3'
miRNA:   3'- gaUgCGUUGUCGG-GaCGCCGCGCGgc -5'
23907 5' -60.7 NC_005262.1 + 62720 0.73 0.162407
Target:  5'- -cGCGCAcGCA-CCCUGauCGGCGCGCUGg -3'
miRNA:   3'- gaUGCGU-UGUcGGGAC--GCCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 2656 0.73 0.162407
Target:  5'- cCUGCGCGGC-GCCggGCGGCGUccugGCCGc -3'
miRNA:   3'- -GAUGCGUUGuCGGgaCGCCGCG----CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.