miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23907 5' -60.7 NC_005262.1 + 25229 0.66 0.484958
Target:  5'- -cAUGCuucuuucaucCGGCCC-GCGGCGgUGCCGa -3'
miRNA:   3'- gaUGCGuu--------GUCGGGaCGCCGC-GCGGC- -5'
23907 5' -60.7 NC_005262.1 + 37250 0.66 0.465539
Target:  5'- -aGCGCGuCGGCCgCUucggaGUGGC-CGCCGg -3'
miRNA:   3'- gaUGCGUuGUCGG-GA-----CGCCGcGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 28556 0.66 0.465539
Target:  5'- -gGCGCc-CAGCCgCUGCcgauCGCGCCGc -3'
miRNA:   3'- gaUGCGuuGUCGG-GACGcc--GCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 43197 1.07 0.000466
Target:  5'- gCUACGCAACAGCCCUGCGGCGCGCCGc -3'
miRNA:   3'- -GAUGCGUUGUCGGGACGCCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 54619 0.66 0.484958
Target:  5'- uCUGCGcCGACcGCCaUGCGuGaagGCGCCGg -3'
miRNA:   3'- -GAUGC-GUUGuCGGgACGC-Cg--CGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 39429 0.66 0.484958
Target:  5'- -gGCGuCGACAGggUUGCagguaucaGGCGCGCCGa -3'
miRNA:   3'- gaUGC-GUUGUCggGACG--------CCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 30052 0.66 0.475199
Target:  5'- uUACGCAGC-GCCUU-CGGCGagcuuCGCCu -3'
miRNA:   3'- gAUGCGUUGuCGGGAcGCCGC-----GCGGc -5'
23907 5' -60.7 NC_005262.1 + 22129 0.66 0.475199
Target:  5'- gUGC-CGGCGGCgaUGaCGGCGCcGCCGg -3'
miRNA:   3'- gAUGcGUUGUCGggAC-GCCGCG-CGGC- -5'
23907 5' -60.7 NC_005262.1 + 6049 0.66 0.475199
Target:  5'- -cGCGCAAUGcccucgagcGCCUugacgauacucaUGCGGCGCGCg- -3'
miRNA:   3'- gaUGCGUUGU---------CGGG------------ACGCCGCGCGgc -5'
23907 5' -60.7 NC_005262.1 + 8499 0.66 0.474228
Target:  5'- aCUGCGCcgcguacucgucgGACAuGCCgaUGCGGCcgaaCGCCGa -3'
miRNA:   3'- -GAUGCG-------------UUGU-CGGg-ACGCCGc---GCGGC- -5'
23907 5' -60.7 NC_005262.1 + 25906 0.66 0.475199
Target:  5'- -cGCGCcaccauACuucccGCCCgUGCcuccgGGCGCGCCGa -3'
miRNA:   3'- gaUGCGu-----UGu----CGGG-ACG-----CCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 15713 0.66 0.475199
Target:  5'- -cGCGCGuCGGCgCCggGCGGCuCGUCGc -3'
miRNA:   3'- gaUGCGUuGUCG-GGa-CGCCGcGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 13533 0.66 0.484958
Target:  5'- -gGCGCgGGCGcGCCCucguUGCGGCG-GUCGa -3'
miRNA:   3'- gaUGCG-UUGU-CGGG----ACGCCGCgCGGC- -5'
23907 5' -60.7 NC_005262.1 + 15678 0.66 0.475199
Target:  5'- -gACGCcg-AGCUCUugcgcGCGGCGCGUCa -3'
miRNA:   3'- gaUGCGuugUCGGGA-----CGCCGCGCGGc -5'
23907 5' -60.7 NC_005262.1 + 6677 0.66 0.484958
Target:  5'- aCU-CGCcGgAGCCCUugaGCuGCGUGCCGu -3'
miRNA:   3'- -GAuGCGuUgUCGGGA---CGcCGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 19933 0.66 0.475199
Target:  5'- -cGCGCGAUcgcgccgaGGUCCUGcCGGCcacCGCCGn -3'
miRNA:   3'- gaUGCGUUG--------UCGGGAC-GCCGc--GCGGC- -5'
23907 5' -60.7 NC_005262.1 + 17103 0.66 0.474228
Target:  5'- aCUGCGCGcGCGGCgCUGacugcauCGGCggGCGUCGg -3'
miRNA:   3'- -GAUGCGU-UGUCGgGAC-------GCCG--CGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 25723 0.66 0.465539
Target:  5'- gUACGuCAGCAagaucGCgCCaGCGGCcGUGCCGu -3'
miRNA:   3'- gAUGC-GUUGU-----CG-GGaCGCCG-CGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 1054 0.66 0.484958
Target:  5'- -aAUGCuGCGGCgCUGaccgccaGCGCGCCGa -3'
miRNA:   3'- gaUGCGuUGUCGgGACgc-----CGCGCGGC- -5'
23907 5' -60.7 NC_005262.1 + 15292 0.66 0.483978
Target:  5'- -aGCGC-GCuGUuaCCUGCGGCugccgucGCGCCGc -3'
miRNA:   3'- gaUGCGuUGuCG--GGACGCCG-------CGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.