Results 1 - 20 of 38 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23908 | 3' | -56.2 | NC_005262.1 | + | 14 | 0.67 | 0.599655 |
Target: 5'- cUCCUGCGCGGgc--GGCGUcGAuGGCa -3' miRNA: 3'- -AGGACGCGUCagaaCCGCGaCU-UCGg -5' |
|||||||
23908 | 3' | -56.2 | NC_005262.1 | + | 1159 | 0.67 | 0.587699 |
Target: 5'- gCC-GCGCGGgCUUGccauccuGCGCgGAAGCCc -3' miRNA: 3'- aGGaCGCGUCaGAAC-------CGCGaCUUCGG- -5' |
|||||||
23908 | 3' | -56.2 | NC_005262.1 | + | 1844 | 0.66 | 0.686817 |
Target: 5'- -gCUGCGCAugcgguugccuG-CUUGGuCGCguaggUGAAGCCa -3' miRNA: 3'- agGACGCGU-----------CaGAACC-GCG-----ACUUCGG- -5' |
|||||||
23908 | 3' | -56.2 | NC_005262.1 | + | 2425 | 0.67 | 0.610552 |
Target: 5'- -gCUGCGCAGcggCUucacgucguucUGGCGCcaGAAGUCu -3' miRNA: 3'- agGACGCGUCa--GA-----------ACCGCGa-CUUCGG- -5' |
|||||||
23908 | 3' | -56.2 | NC_005262.1 | + | 2655 | 0.67 | 0.599655 |
Target: 5'- gCCUGCGCGG-CgccgGGCgGCguccuGGCCg -3' miRNA: 3'- aGGACGCGUCaGaa--CCG-CGacu--UCGG- -5' |
|||||||
23908 | 3' | -56.2 | NC_005262.1 | + | 6181 | 0.67 | 0.625838 |
Target: 5'- cUCCUGCGCcucgcGGUCauaGGCGCgGAAcgauuccuuguugguGCCc -3' miRNA: 3'- -AGGACGCG-----UCAGaa-CCGCGaCUU---------------CGG- -5' |
|||||||
23908 | 3' | -56.2 | NC_005262.1 | + | 9648 | 0.66 | 0.665129 |
Target: 5'- gUCCaaaagaGUGguGUC-UGGCGCUGccGCUc -3' miRNA: 3'- -AGGa-----CGCguCAGaACCGCGACuuCGG- -5' |
|||||||
23908 | 3' | -56.2 | NC_005262.1 | + | 10412 | 0.71 | 0.396735 |
Target: 5'- gUCCUugaaCGCGGUCUgcggcaGGCGCaUGgcGCCg -3' miRNA: 3'- -AGGAc---GCGUCAGAa-----CCGCG-ACuuCGG- -5' |
|||||||
23908 | 3' | -56.2 | NC_005262.1 | + | 11611 | 0.67 | 0.610552 |
Target: 5'- cUCCUGCacGCuGGUCaugcccucGGCGUcGAGGCCg -3' miRNA: 3'- -AGGACG--CG-UCAGaa------CCGCGaCUUCGG- -5' |
|||||||
23908 | 3' | -56.2 | NC_005262.1 | + | 12025 | 0.67 | 0.621469 |
Target: 5'- aCCUGCGCaucGGUCaucccGUGCUGcgcAGCCa -3' miRNA: 3'- aGGACGCG---UCAGaac--CGCGACu--UCGG- -5' |
|||||||
23908 | 3' | -56.2 | NC_005262.1 | + | 12929 | 0.69 | 0.514132 |
Target: 5'- aCCUGCGCGGc----GCGCUGAAGg- -3' miRNA: 3'- aGGACGCGUCagaacCGCGACUUCgg -5' |
|||||||
23908 | 3' | -56.2 | NC_005262.1 | + | 13386 | 0.66 | 0.654234 |
Target: 5'- cCCUcGCGCuc-CgcGGCGCUGAucGCCg -3' miRNA: 3'- aGGA-CGCGucaGaaCCGCGACUu-CGG- -5' |
|||||||
23908 | 3' | -56.2 | NC_005262.1 | + | 13447 | 0.69 | 0.503759 |
Target: 5'- gUCC-GCGUgaagGGUCgcaagGGCGC-GAAGCCc -3' miRNA: 3'- -AGGaCGCG----UCAGaa---CCGCGaCUUCGG- -5' |
|||||||
23908 | 3' | -56.2 | NC_005262.1 | + | 13472 | 0.84 | 0.056166 |
Target: 5'- gUCCUGCGCGGcg--GGCGCUGcGGCCg -3' miRNA: 3'- -AGGACGCGUCagaaCCGCGACuUCGG- -5' |
|||||||
23908 | 3' | -56.2 | NC_005262.1 | + | 13689 | 0.72 | 0.344855 |
Target: 5'- ---cGCGCGGUgcUGGCGCgUGAGGUCg -3' miRNA: 3'- aggaCGCGUCAgaACCGCG-ACUUCGG- -5' |
|||||||
23908 | 3' | -56.2 | NC_005262.1 | + | 14356 | 0.69 | 0.493478 |
Target: 5'- gCUUGCGCGcGUCgacuggcGGCGgUGAuaAGCCg -3' miRNA: 3'- aGGACGCGU-CAGaa-----CCGCgACU--UCGG- -5' |
|||||||
23908 | 3' | -56.2 | NC_005262.1 | + | 15779 | 0.69 | 0.493478 |
Target: 5'- -gCUGCGUGGUCUgGGUGUUGGucgcggggguGCCg -3' miRNA: 3'- agGACGCGUCAGAaCCGCGACUu---------CGG- -5' |
|||||||
23908 | 3' | -56.2 | NC_005262.1 | + | 16099 | 0.7 | 0.424491 |
Target: 5'- cCCgGCGCGGUgCUUGGCGUcaGAccGCCg -3' miRNA: 3'- aGGaCGCGUCA-GAACCGCGa-CUu-CGG- -5' |
|||||||
23908 | 3' | -56.2 | NC_005262.1 | + | 16545 | 0.69 | 0.514132 |
Target: 5'- gUCCUGCGCcugC-UGGCGCUuccauGCCa -3' miRNA: 3'- -AGGACGCGucaGaACCGCGAcuu--CGG- -5' |
|||||||
23908 | 3' | -56.2 | NC_005262.1 | + | 17357 | 0.67 | 0.599655 |
Target: 5'- gUCCgGCGCGGgc--GGCGCggcGGGCCc -3' miRNA: 3'- -AGGaCGCGUCagaaCCGCGac-UUCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home