Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23908 | 3' | -56.2 | NC_005262.1 | + | 21853 | 0.78 | 0.142768 |
Target: 5'- cUCCagcagGUGCAGggaucGGCGCUGAAGCCg -3' miRNA: 3'- -AGGa----CGCGUCagaa-CCGCGACUUCGG- -5' |
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23908 | 3' | -56.2 | NC_005262.1 | + | 59632 | 0.66 | 0.708299 |
Target: 5'- aCCUcGCGCgccAGUCUcuccucGCGCUGGucGCCg -3' miRNA: 3'- aGGA-CGCG---UCAGAac----CGCGACUu-CGG- -5' |
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23908 | 3' | -56.2 | NC_005262.1 | + | 33287 | 0.66 | 0.686817 |
Target: 5'- aCCgcaucGCGCGcaCgccgGGCGCcGAAGCCg -3' miRNA: 3'- aGGa----CGCGUcaGaa--CCGCGaCUUCGG- -5' |
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23908 | 3' | -56.2 | NC_005262.1 | + | 1844 | 0.66 | 0.686817 |
Target: 5'- -gCUGCGCAugcgguugccuG-CUUGGuCGCguaggUGAAGCCa -3' miRNA: 3'- agGACGCGU-----------CaGAACC-GCG-----ACUUCGG- -5' |
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23908 | 3' | -56.2 | NC_005262.1 | + | 9648 | 0.66 | 0.665129 |
Target: 5'- gUCCaaaagaGUGguGUC-UGGCGCUGccGCUc -3' miRNA: 3'- -AGGa-----CGCguCAGaACCGCGACuuCGG- -5' |
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23908 | 3' | -56.2 | NC_005262.1 | + | 18490 | 0.67 | 0.643319 |
Target: 5'- uUCCUGUGCAG-CUUucCGUacaGAAGCCg -3' miRNA: 3'- -AGGACGCGUCaGAAccGCGa--CUUCGG- -5' |
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23908 | 3' | -56.2 | NC_005262.1 | + | 6181 | 0.67 | 0.625838 |
Target: 5'- cUCCUGCGCcucgcGGUCauaGGCGCgGAAcgauuccuuguugguGCCc -3' miRNA: 3'- -AGGACGCG-----UCAGaa-CCGCGaCUU---------------CGG- -5' |
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23908 | 3' | -56.2 | NC_005262.1 | + | 62295 | 0.67 | 0.621469 |
Target: 5'- gCCgcggGCGCGG-CUUGGUGUUu--GCCa -3' miRNA: 3'- aGGa---CGCGUCaGAACCGCGAcuuCGG- -5' |
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23908 | 3' | -56.2 | NC_005262.1 | + | 14 | 0.67 | 0.599655 |
Target: 5'- cUCCUGCGCGGgc--GGCGUcGAuGGCa -3' miRNA: 3'- -AGGACGCGUCagaaCCGCGaCU-UCGg -5' |
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23908 | 3' | -56.2 | NC_005262.1 | + | 2655 | 0.67 | 0.599655 |
Target: 5'- gCCUGCGCGG-CgccgGGCgGCguccuGGCCg -3' miRNA: 3'- aGGACGCGUCaGaa--CCG-CGacu--UCGG- -5' |
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23908 | 3' | -56.2 | NC_005262.1 | + | 13689 | 0.72 | 0.344855 |
Target: 5'- ---cGCGCGGUgcUGGCGCgUGAGGUCg -3' miRNA: 3'- aggaCGCGUCAgaACCGCG-ACUUCGG- -5' |
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23908 | 3' | -56.2 | NC_005262.1 | + | 14356 | 0.69 | 0.493478 |
Target: 5'- gCUUGCGCGcGUCgacuggcGGCGgUGAuaAGCCg -3' miRNA: 3'- aGGACGCGU-CAGaa-----CCGCgACU--UCGG- -5' |
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23908 | 3' | -56.2 | NC_005262.1 | + | 13447 | 0.69 | 0.503759 |
Target: 5'- gUCC-GCGUgaagGGUCgcaagGGCGC-GAAGCCc -3' miRNA: 3'- -AGGaCGCG----UCAGaa---CCGCGaCUUCGG- -5' |
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23908 | 3' | -56.2 | NC_005262.1 | + | 12929 | 0.69 | 0.514132 |
Target: 5'- aCCUGCGCGGc----GCGCUGAAGg- -3' miRNA: 3'- aGGACGCGUCagaacCGCGACUUCgg -5' |
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23908 | 3' | -56.2 | NC_005262.1 | + | 54462 | 0.68 | 0.550006 |
Target: 5'- aUCaGCGCAacGUCgaGGCGCUgcucgcggugcagccGAAGCCg -3' miRNA: 3'- aGGaCGCGU--CAGaaCCGCGA---------------CUUCGG- -5' |
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23908 | 3' | -56.2 | NC_005262.1 | + | 61803 | 0.68 | 0.57795 |
Target: 5'- gCCUGCGCGGcgcaugcCUcGGCGCUcGAGUa -3' miRNA: 3'- aGGACGCGUCa------GAaCCGCGAcUUCGg -5' |
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23908 | 3' | -56.2 | NC_005262.1 | + | 1159 | 0.67 | 0.587699 |
Target: 5'- gCC-GCGCGGgCUUGccauccuGCGCgGAAGCCc -3' miRNA: 3'- aGGaCGCGUCaGAAC-------CGCGaCUUCGG- -5' |
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23908 | 3' | -56.2 | NC_005262.1 | + | 42523 | 1.11 | 0.000614 |
Target: 5'- cUCCUGCGCAGUCUUGGCGCUGAAGCCc -3' miRNA: 3'- -AGGACGCGUCAGAACCGCGACUUCGG- -5' |
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23908 | 3' | -56.2 | NC_005262.1 | + | 51669 | 0.67 | 0.644411 |
Target: 5'- cUCCaGCGCGGcgaUCUgcucgcgcgcacggcGGCGCUGAuugcGCCc -3' miRNA: 3'- -AGGaCGCGUC---AGAa--------------CCGCGACUu---CGG- -5' |
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23908 | 3' | -56.2 | NC_005262.1 | + | 12025 | 0.67 | 0.621469 |
Target: 5'- aCCUGCGCaucGGUCaucccGUGCUGcgcAGCCa -3' miRNA: 3'- aGGACGCG---UCAGaac--CGCGACu--UCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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