Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23908 | 5' | -55.2 | NC_005262.1 | + | 1069 | 0.66 | 0.762552 |
Target: 5'- aCCGCCagCGcGCCGaUCAGGgugCGuGCGc -3' miRNA: 3'- -GGCGGaaGCaCGGCaAGUCCa--GC-UGU- -5' |
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23908 | 5' | -55.2 | NC_005262.1 | + | 2894 | 0.69 | 0.614782 |
Target: 5'- aUCGCCUUCGaucagGCUggugagGUUCAucuGGUCGGCGc -3' miRNA: 3'- -GGCGGAAGCa----CGG------CAAGU---CCAGCUGU- -5' |
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23908 | 5' | -55.2 | NC_005262.1 | + | 3439 | 0.67 | 0.752485 |
Target: 5'- gCCGCCUUCagguucuUGCCGUccuUCAGGUagccGCGc -3' miRNA: 3'- -GGCGGAAGc------ACGGCA---AGUCCAgc--UGU- -5' |
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23908 | 5' | -55.2 | NC_005262.1 | + | 7868 | 0.7 | 0.550731 |
Target: 5'- gCCGCCcUCGaucGCCGgaC-GGUCGACGu -3' miRNA: 3'- -GGCGGaAGCa--CGGCaaGuCCAGCUGU- -5' |
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23908 | 5' | -55.2 | NC_005262.1 | + | 8225 | 0.66 | 0.762552 |
Target: 5'- gCGCgCUgCGaGCCGgcCGGGUCGAUg -3' miRNA: 3'- gGCG-GAaGCaCGGCaaGUCCAGCUGu -5' |
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23908 | 5' | -55.2 | NC_005262.1 | + | 11891 | 0.67 | 0.721621 |
Target: 5'- uUGCCggcgaagcggUCgGUGCCGUUCGGcggcGUCGGCu -3' miRNA: 3'- gGCGGa---------AG-CACGGCAAGUC----CAGCUGu -5' |
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23908 | 5' | -55.2 | NC_005262.1 | + | 15034 | 0.66 | 0.782291 |
Target: 5'- gCUGCCaugUUCGcGCCGaccUUCAGGUucuuccCGACAu -3' miRNA: 3'- -GGCGG---AAGCaCGGC---AAGUCCA------GCUGU- -5' |
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23908 | 5' | -55.2 | NC_005262.1 | + | 19604 | 0.69 | 0.58258 |
Target: 5'- gUCGCCUUCgGUGCgaGUggcGGUCGGCGu -3' miRNA: 3'- -GGCGGAAG-CACGg-CAaguCCAGCUGU- -5' |
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23908 | 5' | -55.2 | NC_005262.1 | + | 20705 | 0.67 | 0.700601 |
Target: 5'- aUGCC-UCuUGCCcggUCAGGUCGAUg -3' miRNA: 3'- gGCGGaAGcACGGca-AGUCCAGCUGu -5' |
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23908 | 5' | -55.2 | NC_005262.1 | + | 20736 | 0.7 | 0.571914 |
Target: 5'- gCUGCCgcggcgcgCgGUGCCGgcCGGGUCGAUg -3' miRNA: 3'- -GGCGGaa------G-CACGGCaaGUCCAGCUGu -5' |
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23908 | 5' | -55.2 | NC_005262.1 | + | 22042 | 0.67 | 0.752485 |
Target: 5'- gCGCCg--GUGCCGgcauUCuGGGUCGugAu -3' miRNA: 3'- gGCGGaagCACGGCa---AG-UCCAGCugU- -5' |
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23908 | 5' | -55.2 | NC_005262.1 | + | 23270 | 0.67 | 0.710097 |
Target: 5'- cCCGCCgcgaCGaugaacuUGUCGcgCAGGUCGAUg -3' miRNA: 3'- -GGCGGaa--GC-------ACGGCaaGUCCAGCUGu -5' |
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23908 | 5' | -55.2 | NC_005262.1 | + | 25739 | 0.66 | 0.782291 |
Target: 5'- gCGCCagcggcCGUGCCGUUC--GUCGugAu -3' miRNA: 3'- gGCGGaa----GCACGGCAAGucCAGCugU- -5' |
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23908 | 5' | -55.2 | NC_005262.1 | + | 28169 | 0.7 | 0.529795 |
Target: 5'- cCCGCCg-CGUGCCGUUgCcGGaCGACu -3' miRNA: 3'- -GGCGGaaGCACGGCAA-GuCCaGCUGu -5' |
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23908 | 5' | -55.2 | NC_005262.1 | + | 29632 | 0.71 | 0.507111 |
Target: 5'- cUCGaCCUUCGUGCCGgcgacggccggCGGGUaGACGu -3' miRNA: 3'- -GGC-GGAAGCACGGCaa---------GUCCAgCUGU- -5' |
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23908 | 5' | -55.2 | NC_005262.1 | + | 30112 | 0.67 | 0.738196 |
Target: 5'- gCCGCCgcgaagcccacgaUCGUGCCGcugCuGGUCGcCGa -3' miRNA: 3'- -GGCGGa------------AGCACGGCaa-GuCCAGCuGU- -5' |
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23908 | 5' | -55.2 | NC_005262.1 | + | 32715 | 0.67 | 0.7423 |
Target: 5'- -gGCCg-CGgcucGCCcUUCAGGUCGGCGa -3' miRNA: 3'- ggCGGaaGCa---CGGcAAGUCCAGCUGU- -5' |
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23908 | 5' | -55.2 | NC_005262.1 | + | 33263 | 0.67 | 0.711148 |
Target: 5'- uCgGCCUUCGgcguUGCUucgccCAGGUCGGCGa -3' miRNA: 3'- -GgCGGAAGC----ACGGcaa--GUCCAGCUGU- -5' |
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23908 | 5' | -55.2 | NC_005262.1 | + | 33531 | 0.67 | 0.721621 |
Target: 5'- cCCGC--UCG-GCCuuGUUCAGGUCGuCGa -3' miRNA: 3'- -GGCGgaAGCaCGG--CAAGUCCAGCuGU- -5' |
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23908 | 5' | -55.2 | NC_005262.1 | + | 34158 | 0.68 | 0.679325 |
Target: 5'- cCCGCCggcCGUcGCCGgcacgaAGGUCGAg- -3' miRNA: 3'- -GGCGGaa-GCA-CGGCaag---UCCAGCUgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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