Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23908 | 5' | -55.2 | NC_005262.1 | + | 35400 | 0.66 | 0.791942 |
|
Target: 5'- gUGCCgcuc-GUCGUUCGGGUCGaACAc -3' miRNA: 3'- gGCGGaagcaCGGCAAGUCCAGC-UGU- -5' |
|||||||
| 23908 | 5' | -55.2 | NC_005262.1 | + | 41683 | 0.68 | 0.657877 |
|
Target: 5'- uUGCCggccaCGUGCag--CAGGUCGACGu -3' miRNA: 3'- gGCGGaa---GCACGgcaaGUCCAGCUGU- -5' |
|||||||
| 23908 | 5' | -55.2 | NC_005262.1 | + | 42560 | 1.11 | 0.001127 |
|
Target: 5'- gCCGCCUUCGUGCCGUUCAGGUCGACAa -3' miRNA: 3'- -GGCGGAAGCACGGCAAGUCCAGCUGU- -5' |
|||||||
| 23908 | 5' | -55.2 | NC_005262.1 | + | 45685 | 0.66 | 0.791942 |
|
Target: 5'- gCCGCaCUUCGUGCgCaucgaGGGcCGGCAg -3' miRNA: 3'- -GGCG-GAAGCACG-Gcaag-UCCaGCUGU- -5' |
|||||||
| 23908 | 5' | -55.2 | NC_005262.1 | + | 47818 | 0.67 | 0.732009 |
|
Target: 5'- aCGCCgaucUCGUcgaucGCCag-CAGGUCGACc -3' miRNA: 3'- gGCGGa---AGCA-----CGGcaaGUCCAGCUGu -5' |
|||||||
| 23908 | 5' | -55.2 | NC_005262.1 | + | 50443 | 0.68 | 0.668617 |
|
Target: 5'- aCGUCgUCGUGCCGcgCgAGGagGACGg -3' miRNA: 3'- gGCGGaAGCACGGCaaG-UCCagCUGU- -5' |
|||||||
| 23908 | 5' | -55.2 | NC_005262.1 | + | 50638 | 0.66 | 0.762552 |
|
Target: 5'- cCCGCCaaggagUUGUGCCGcgCAGcGcgcgCGGCGg -3' miRNA: 3'- -GGCGGa-----AGCACGGCaaGUC-Ca---GCUGU- -5' |
|||||||
| 23908 | 5' | -55.2 | NC_005262.1 | + | 52724 | 0.67 | 0.700601 |
|
Target: 5'- gCCGcCCUUUG-GCCGcUCGGGcucaggCGACGc -3' miRNA: 3'- -GGC-GGAAGCaCGGCaAGUCCa-----GCUGU- -5' |
|||||||
| 23908 | 5' | -55.2 | NC_005262.1 | + | 63278 | 0.67 | 0.752485 |
|
Target: 5'- gCCGCCUgcUUGacgGCCGgcugcuggcUCGGcGUCGACGu -3' miRNA: 3'- -GGCGGA--AGCa--CGGCa--------AGUC-CAGCUGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home