miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23908 5' -55.2 NC_005262.1 + 63278 0.67 0.752485
Target:  5'- gCCGCCUgcUUGacgGCCGgcugcuggcUCGGcGUCGACGu -3'
miRNA:   3'- -GGCGGA--AGCa--CGGCa--------AGUC-CAGCUGU- -5'
23908 5' -55.2 NC_005262.1 + 52724 0.67 0.700601
Target:  5'- gCCGcCCUUUG-GCCGcUCGGGcucaggCGACGc -3'
miRNA:   3'- -GGC-GGAAGCaCGGCaAGUCCa-----GCUGU- -5'
23908 5' -55.2 NC_005262.1 + 50638 0.66 0.762552
Target:  5'- cCCGCCaaggagUUGUGCCGcgCAGcGcgcgCGGCGg -3'
miRNA:   3'- -GGCGGa-----AGCACGGCaaGUC-Ca---GCUGU- -5'
23908 5' -55.2 NC_005262.1 + 50443 0.68 0.668617
Target:  5'- aCGUCgUCGUGCCGcgCgAGGagGACGg -3'
miRNA:   3'- gGCGGaAGCACGGCaaG-UCCagCUGU- -5'
23908 5' -55.2 NC_005262.1 + 47818 0.67 0.732009
Target:  5'- aCGCCgaucUCGUcgaucGCCag-CAGGUCGACc -3'
miRNA:   3'- gGCGGa---AGCA-----CGGcaaGUCCAGCUGu -5'
23908 5' -55.2 NC_005262.1 + 45685 0.66 0.791942
Target:  5'- gCCGCaCUUCGUGCgCaucgaGGGcCGGCAg -3'
miRNA:   3'- -GGCG-GAAGCACG-Gcaag-UCCaGCUGU- -5'
23908 5' -55.2 NC_005262.1 + 42560 1.11 0.001127
Target:  5'- gCCGCCUUCGUGCCGUUCAGGUCGACAa -3'
miRNA:   3'- -GGCGGAAGCACGGCAAGUCCAGCUGU- -5'
23908 5' -55.2 NC_005262.1 + 41683 0.68 0.657877
Target:  5'- uUGCCggccaCGUGCag--CAGGUCGACGu -3'
miRNA:   3'- gGCGGaa---GCACGgcaaGUCCAGCUGU- -5'
23908 5' -55.2 NC_005262.1 + 35400 0.66 0.791942
Target:  5'- gUGCCgcuc-GUCGUUCGGGUCGaACAc -3'
miRNA:   3'- gGCGGaagcaCGGCAAGUCCAGC-UGU- -5'
23908 5' -55.2 NC_005262.1 + 34158 0.68 0.679325
Target:  5'- cCCGCCggcCGUcGCCGgcacgaAGGUCGAg- -3'
miRNA:   3'- -GGCGGaa-GCA-CGGCaag---UCCAGCUgu -5'
23908 5' -55.2 NC_005262.1 + 33531 0.67 0.721621
Target:  5'- cCCGC--UCG-GCCuuGUUCAGGUCGuCGa -3'
miRNA:   3'- -GGCGgaAGCaCGG--CAAGUCCAGCuGU- -5'
23908 5' -55.2 NC_005262.1 + 33263 0.67 0.711148
Target:  5'- uCgGCCUUCGgcguUGCUucgccCAGGUCGGCGa -3'
miRNA:   3'- -GgCGGAAGC----ACGGcaa--GUCCAGCUGU- -5'
23908 5' -55.2 NC_005262.1 + 32715 0.67 0.7423
Target:  5'- -gGCCg-CGgcucGCCcUUCAGGUCGGCGa -3'
miRNA:   3'- ggCGGaaGCa---CGGcAAGUCCAGCUGU- -5'
23908 5' -55.2 NC_005262.1 + 30112 0.67 0.738196
Target:  5'- gCCGCCgcgaagcccacgaUCGUGCCGcugCuGGUCGcCGa -3'
miRNA:   3'- -GGCGGa------------AGCACGGCaa-GuCCAGCuGU- -5'
23908 5' -55.2 NC_005262.1 + 29632 0.71 0.507111
Target:  5'- cUCGaCCUUCGUGCCGgcgacggccggCGGGUaGACGu -3'
miRNA:   3'- -GGC-GGAAGCACGGCaa---------GUCCAgCUGU- -5'
23908 5' -55.2 NC_005262.1 + 28169 0.7 0.529795
Target:  5'- cCCGCCg-CGUGCCGUUgCcGGaCGACu -3'
miRNA:   3'- -GGCGGaaGCACGGCAA-GuCCaGCUGu -5'
23908 5' -55.2 NC_005262.1 + 25739 0.66 0.782291
Target:  5'- gCGCCagcggcCGUGCCGUUC--GUCGugAu -3'
miRNA:   3'- gGCGGaa----GCACGGCAAGucCAGCugU- -5'
23908 5' -55.2 NC_005262.1 + 23270 0.67 0.710097
Target:  5'- cCCGCCgcgaCGaugaacuUGUCGcgCAGGUCGAUg -3'
miRNA:   3'- -GGCGGaa--GC-------ACGGCaaGUCCAGCUGu -5'
23908 5' -55.2 NC_005262.1 + 22042 0.67 0.752485
Target:  5'- gCGCCg--GUGCCGgcauUCuGGGUCGugAu -3'
miRNA:   3'- gGCGGaagCACGGCa---AG-UCCAGCugU- -5'
23908 5' -55.2 NC_005262.1 + 20736 0.7 0.571914
Target:  5'- gCUGCCgcggcgcgCgGUGCCGgcCGGGUCGAUg -3'
miRNA:   3'- -GGCGGaa------G-CACGGCaaGUCCAGCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.